Table I.
Summary of the transposable elements found within the 300-kb barley sequence
| Name | Element Type | Element Subgroup | Size | TSD | Reference Sequence |
|---|---|---|---|---|---|
| bp | |||||
| Ashbury_AY643842_1 | LTR retrotransposon | Ty3/gypsy | 8,278 | N/A | Novel |
| Ashbury_AY643844_2 | LTR retrotransposon | Ty3/gypsy | 12,131 | GTGAG | Novel |
| BAGY-2_AY643843 | LTR retrotransposon | Ty3/gypsy | 10,260 | CTAAA | TREP206; AF254799 |
| BARE-1_AY643843_1 | LTR retrotransposon | Ty1/copia | 8,917 | GTTGA | TREP725; AF227791 |
| BARE-1_AY643844_2 | LTR retrotransposon | Ty1/copia | 8,932 | GCGTG | TREP725; AF227791 |
| BARE-1_AY643844_3 | LTR retrotransposon | Ty1/copia | 8,957 | CATGT | TREP725; AF227791 |
| BARE-1_AY643844_5 | LTR retrotransposon | Ty1/copia | 8,503 | CAAGA | TREP725; AF227791 |
| BARE-1_AY643844_4 solo LTR | LTR retrotransposon | Ty1/copia | 1,818 | GGAAG | TREP725; AF227791 |
| BARE-2_AY643844_1 | LTR retrotransposon | Ty1/copia | 9,203 | ACACC | AJ279072 |
| BARE-2_AY643844_2 | LTR retrotransposon | Ty1/copia | 8,619 | GTGAC/G | AJ279072 |
| BARE-2_AY643844_5 | LTR retrotransposon | Ty1/copia | 5,021 | N/A | AJ279072 |
| BARE-2_AY643844_3 solo LTR | LTR retrotransposon | Ty1/copia | 1,807 | GTTAC | AJ279072 |
| BARE-2_AY643844_4 solo LTR | LTR retrotransposon | Ty1/copia | 1,813 | AT/GGCT | AJ279072 |
| CACTA_AY643843 | Transposon | CACTA | 2,140 | TAT | Novel |
| Caspar_AY643842_1 | Transposon | CACTA | 7,646 | N/A | TREP788 |
| Caspar_AY643844_2 | Transposon | CACTA | 12,085 | TTA | TREP788 |
| Dido_AY643843_1 | Non-LTR retrotransposon | SINE | 256 | N/A | Novel |
| Dido_AY643843_2 | Non-LTR retrotransposon | SINE | 256 | N/A | Novel |
| Haight_AY643844 | LTR retrotransposon | Ty3/gypsy | 13,050 | CCCGC | Novel |
| HORGY_AY643844 | LTR retrotransposon | Ty3/gypsy | 3,077 | TCCTC | TREP728; AF427791 |
| HORPIA-2_AY643843 | LTR retrotransposon | Ty1/copia | 4,285 | CGCGC | TREP730;AF427791 |
| Inga_AY643843 | LTR retrotransposon | Ty1/copia | 5,650 | N/A | TREP704; AF474982 |
| IR with TSD | Unclassified | N/A | 2,244 | ATAGG | Novel |
| Lolaog_AY643843 | LTR retrotransposon | Ty3/gypsy | 10,698 | GCATA | AY268139 |
| Maximus_AY643844 | LTR retrotransposon | Ty1/copia | 13,775 | CCAAC | Novel |
| Morpheus_AY643843 | Non-LTR retrotransposon | LINE | 7,966 | ATGCCG | Novel |
| Persphone_AY643843 | Non-LTR retrotransposon | LINE | 7,889 | ATGTCTGCCCAACGG | Novel |
| Sabrina_AY643843_1 | LTR retrotransposon | Ty3/gypsy | 8,000 | GTCAT | TREP710; AF474071 |
| Sabrina_AY643844_2 | LTR retrotransposon | Ty3/gypsy | 8,183 | GAC/ACC | TREP710; AF474071 |
| Sukkula_AY643843_1 solo LTR | LTR retrotransposon | Ty3/gypsy | 4,961 | CAAGC/CG | TREP715; AF474072 |
| Sukkula_AY643843_2 solo LTR | LTR retrotransposon | Ty3/gypsy | 4,844 | ACTGG | TREP715; AF474072 |
| TRIM_AY643843 | Non-LTR retrotransposon | TRIM | 725 | GCCGG | AY164585 |
| Vagabond_AY643844 | LTR retrotransposon | Ty3/gypsy | 13,918 | GGTCAA | Novela |
a
Similarity to TREP253; AF459639 was to internal region only.