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. 2017 Jan 13;7:40694. doi: 10.1038/srep40694

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Genomes of 106 strains were aligned and core genome was analysed using ClonalFrameML to obtain a tree considering recombination. Different lineages inferred are coloured differently. On the tree in circular way, information on seven different genes/clusters is marked. Moving outward in the circles, the strains are marked with having BXO8 type cellobiosidase allele (1), BXO8 type LPS cassette (2), genes having non-synonymous changes in raxX (3), raxST (4), raxA (5), raxB (6) and diameter of outermost circle indicating the variation in the number of CRISPR spacers.