Table 1. Number of genes, SNPs and associations identified in Arabidopsis halleri using different environmental association approaches and data sets.
| Environmental association analysis and data set | No. of genesa | No. of SNPsa | No. of associationsa |
|---|---|---|---|
| Candidates identified (ODb) | 175 | 1037 | 1153 |
| Candidates tested (ID) | 35 | 74 | 85 |
| PMTs (ID) | 16 (44%) | 30 (41%) | 53 |
| PMTs (OD∩ID) | 4 (11%) | 4 (5%) | 4 (5%) |
| LFMMs (ID) | 23 (66%) | 38 (51%) | 76 |
| LFMMs (OD∩ID) | 9 (26%) | 11 (15%) | 11 (13%) |
| PMTs and LFMMs (OD∩ID) | 11 (31%) | 13 (18%) | 13 (15%) |
Abbreviations: ID, independent data set; OD, original data set; PMTs, partial Mantel tests; LFMMs, latent factor mixed models; ∩, overlap between data sets; SNP, single-nucleotide polymorphism.
a
The proportions given refer to the candidates tested in the ID.
b
Candidates that were reported in the OD (Fischer et al., 2013).