Table 4.
List of significant SNP associations, the genes tagged by significant SNPs and information from the genome wide analysis of sorghum germplasm under heat stress
| Trait | SNP | FDR Adjusted p-Values* | R 2 Value** | Nucleotide Variation | Distance to nearest gene (bp) *** | Nearest Gene ID |
|---|---|---|---|---|---|---|
| HSt_SFW | S2_73084591 | 0.02 | 14.71 | C/T | (−)900 | Sb02g038910 |
| HSt_SFW | S2_73084594 | 0.02 | 14.60 | C/T | (−)903 | Sb02g038910 |
| HSt_SFW | S2_73084593 | 0.02 | −14.71 | G/C | (−)902 | Sb02g038910 |
| HSt_SFW | S2_73084596 | 0.02 | −14.71 | G/A | (−)905 | Sb02g038910 |
| HSt_SFW | S6_46226536 | 0.02 | −10.48 | G/A | (+)847 | Sb06g017060 |
| HSt_SFW | S2_73084592 | 0.02 | 14.60 | A/G | (−)901 | Sb02g038910 |
| HSt_SFW | S5_19670409 | 0.02 | −15.00 | G/A | - | Sb05g009740 |
| HSt_SL | S6_45982131 | 0.07 | 8.69 | A/G | (−)318 | Sb06g016880 |
| HSt_SL | S6_46194160 | 0.07 | −7.96 | G/A | (−)127 | Sb06g017025 |
| HSt_SL | S3_1638378 | 0.07 | −24.38 | T/G | 302 | Sb03g001820 |
| HSt_ChlB_W−1 | S4_48000182 | 0.12 | 20.89 | G/A | - | Sb04g020520 |
| HSt_ChlB_W−1 | S4_48000349 | 0.13 | 20.39 | G/A | - | Sb04g020520 |
*False Discovery Rate (FDR) values for the significantly associated SNP at p-value of 1E-06
**Percent trait variation explained by the associated SNPs
***Distance to the nearest annotated gene coordinates in the reference genome