Table 1.
Pfam domains enriched in the root transcriptome
| Pfam ID | Domain description | Total | Root | P.value | Q.value |
|---|---|---|---|---|---|
| PF00413.19 | Matrixin | 62 | 26 | 5.96E-22 | 8.10E-20 |
| PF00045.14 | Hemopexin | 40 | 20 | 4.45E-19 | 3.02E-17 |
| PF01471.13 | Putative peptidoglycan binding domain | 31 | 14 | 5.95E-13 | 2.69E-11 |
| PF05649.8 | Peptidase family M13 | 34 | 12 | 8.85E-10 | 3.01E-08 |
| PF13520.1 | Amino acid permease | 21 | 7 | 4.94E-06 | 1.12E-04 |
| PF07690.11 | Major Facilitator Superfamily | 123 | 16 | 6.63E-06 | 1.29E-04 |
| PF00939.14 | Sodium:sulfate symporter transmembrane region | 10 | 5 | 1.17E-05 | 1.76E-04 |
| PF03600.11 | Citrate transporter | 10 | 5 | 1.17E-05 | 1.76E-04 |
| PF00324.16 | Amino acid permease | 24 | 7 | 1.34E-05 | 1.82E-04 |
| PF00246.19 | Zinc carboxypeptidase | 27 | 7 | 3.14E-05 | 3.88E-04 |
| PF07953.7 | Clostridium neurotoxin, N-terminal receptor binding | 7 | 4 | 4.93E-05 | 5.15E-04 |
| PF12388.3 | Dual-action HEIGH metallo-peptidase | 7 | 4 | 4.93E-05 | 5.15E-04 |
| PF14670.1 | Coagulation Factor Xa inhibitory site | 68 | 10 | 1.27E-05 | 1.23E-03 |
| PF01433.15 | Peptidase family M1 | 24 | 6 | 1.47E-04 | 1.33E-03 |
| PF14653.1 | Insulin growth factor-like family | 16 | 5 | 1.70E-04 | 1.44E-03 |
| PF01431.16 | Peptidase family M13 | 36 | 7 | 2.24E-04 | 1.79E-03 |
| PF02244.11 | Carboxypeptidase activation peptide | 6 | 3 | 8.07E-04 | 5.77E-03 |
| PF00431.15 | CUB domain | 46 | 7 | 1.06E-03 | 7.20E-03 |
| PF05572.8 | Pregnancy-associated plasma protein-A | 7 | 3 | 1.37E-03 | 8.90E-03 |
| PF01607.19 | Chitin binding Peritrophin-A domain | 63 | 8 | 1.60E-03 | 9.88E-03 |
| PF13582.1 | Metallo-peptidase family M12B Reprolysin-like | 27 | 5 | 2.27E-03 | 1.29E-02 |
| PF00664.18 | ABC transporter transmembrane region | 41 | 6 | 2.95E-03 | 1.53E-02 |
| PF10462.4 | Peptidase M66 | 9 | 3 | 3.13E-03 | 1.53E-02 |
| PF00209.13 | Sodium:neurotransmitter symporter family | 32 | 5 | 4.91E-03 | 2.22E-02 |
| PF13385.1 | Concanavalin A-like lectin/glucanases superfamily | 80 | 8 | 7.12E-03 | 2.93E-02 |
| PF00005.22 | ABC transporter | 66 | 7 | 8.43E-03 | 3.37E-02 |
| PF13688.1 | Metallo-peptidase family M12 | 24 | 4 | 9.29E-03 | 3.58E-02 |
| PF01391.13 | Collagen triple helix repeat (20 copies) | 39 | 5 | 1.15E-02 | 3.58E-02 |
| PF03209.10 | PUCC protein | 5 | 2 | 1.16E-02 | 3.58E-02 |
| PF04727.8 | ELMO/CED-12 family | 5 | 2 | 1.16E-02 | 3.58E-02 |
| PF11669.3 | WW domain-binding protein 1 | 5 | 2 | 1.16E-02 | 3.58E-02 |
| PF13243.1 | Prenyltransferase-like | 5 | 2 | 1.16E-02 | 3.58E-02 |
| PF11838.3 | ERAP1-like C-terminal domain | 14 | 3 | 1.19E-02 | 3.58E-02 |
| PF00629.18 | MAM domain | 26 | 4 | 1.24E-02 | 3.58E-02 |
| PF00012.15 | Hsp70 protein | 15 | 3 | 1.45E-02 | 4.10E-02 |
| PF00083.19 | Sugar (and other) transporter | 43 | 5 | 1.71E-02 | 4.65E-02 |