Table 2. The BCR-ABL1 secondary reference panel was highly concordant with the WHO panel.
Reference gene | RT-ddPCR IS CF |
WHO panel |
Secondary panel |
||||
---|---|---|---|---|---|---|---|
Panel member | Mean empirical %BCR-ABL1 | Nominal %BCR-ABL1IS | Panel member | Mean empirical %BCR-ABL1 | Assigned %BCR-ABL1IS | ||
(a) Empirical and %BCR-ABLIS values | |||||||
ABL1 | 0.93 | 4 (08/198) | 11.2250 | 10.7469 | A | 13.7178 | 12.7575 |
3 (08/196) | 1.2540 | 1.1672 | B | 1.2841 | 1.1942 | ||
2 (08/194) | 0.1260 | 0.1112 | C | 0.1095 | 0.1019 | ||
1 (08/192) | 0.0130 | 0.0118 | D | 0.0116 | 0.0108 | ||
E | 0.0041 | 0.0038 | |||||
BCR | 1.85 | 4 (08/198) | 9.8135 | 16.3129 | A | 11.5502 | 21.3678 |
3 (08/196) | 0.8441 | 1.6627 | B | 0.7300 | 1.3505 | ||
2 (08/194) | 0.0988 | 0.1753 | C | 0.0759 | 0.1404 | ||
1 (08/192) | 0.0098 | 0.0195 | D | 0.0081 | 0.0150 | ||
E | 0.0027 | 0.0050 | |||||
GUSB | 1.28 | 4 (08/198) | 6.5834 | 10.1235 | A | 9.1800 | 11.7504 |
3 (08/196) | 0.5924 | 0.8295 | B | 0.6219 | 0.7960 | ||
2 (08/194) | 0.0677 | 0.0749 | C | 0.0628 | 0.0804 | ||
1 (08/192) | 0.0065 | 0.0071 | D | 0.0068 | 0.0087 | ||
E | 0.0023 | 0.0029 |
Reference gene |
WHO panel |
Secondary panel |
||
---|---|---|---|---|
Panel member | Mean copy number per ng RNA | Panel member | Mean copy number per ng RNA | |
(b) Copy numbers of BCR-ABL1, ABL1, BCR and GUSB per ng of RNA | ||||
BCR-ABL1 | 4 (08/198) | 92.98 | A | 103.27 |
3 (08/196) | 9.75 | B | 8.56 | |
2 (08/194) | 0.99 | C | 0.72 | |
1 (08/192) | 0.10 | D | 0.08 | |
E | 0.03 | |||
ABL1 | 4 (08/198) | 831.74 | A | 754.55 |
3 (08/196) | 778.56 | B | 665.80 | |
2 (08/194) | 784.95 | C | 651.95 | |
1 (08/192) | 785.90 | D | 653.85 | |
E | 642.71 | |||
BCR | 4 (08/198) | 948.59 | A | 973.44 |
3 (08/196) | 1036.91 | B | 1058.25 | |
2 (08/194) | 1004.05 | C | 1012.51 | |
1 (08/192) | 1033.21 | D | 1079.15 | |
E | 1017.74 | |||
GUSB | 4 (08/198) | 1380.43 | A | 1198.94 |
3 (08/196) | 1454.12 | B | 1238.22 | |
2 (08/194) | 1390.83 | C | 1261.53 | |
1 (08/192) | 1388.23 | D | 1283.79 | |
E | 1244.11 |
Abbreviations: CF, conversion factor; IS, International Scale; RT-ddPCR, reverse-transcription droplet digital PCR; WHO, World Health Organization.