Table 4.
SNPs loci that exhibit significantly elevated FST value, identified in CDS regions
| Chr | BPa | Smoothed AMOVA FST | Smoothed AMOVA FST P-value | Gene ID |
|---|---|---|---|---|
| Scaffold_11180 | 1238 | 1 | < 0.05 | cds:HCOI00022400.t1 |
| Scaffold_1311 | 4966 | 1 | < 0.05 | cds:HCOI00277600.t1 |
| Scaffold_1311 | 4972 | 1 | < 0.05 | cds:HCOI00277600.t1 |
| Scaffold_1409 | 28,964 | 1 | < 0.05 | cds:HCOI00335100.t1 |
| Scaffold_148 | 58,650 | 0.750886831 | < 0.05 | bcds:HCOI00506600.t3 |
| Scaffold_148 | 65,574 | 0.755702686 | < 0.05 | bcds:HCOI00506600.t3 |
| Scaffold_1483 | 47,819 | 1 | < 0.05 | bcds:HCOI00378500.t1 |
| Scaffold_1511 | 40,561 | 1 | < 0.05 | cds:HCOI00392800.t1 |
| Scaffold_1595 | 23,974 | 1 | < 0.05 | cds:HCOI00449900.t1 |
| Scaffold_207 | 42,678 | 1 | < 0.05 | cds:HCOI00808400.t1 |
| Scaffold_2990 | 2020 | 1 | < 0.05 | bcds:HCOI01034200.t1 |
| Scaffold_340 | 169,069 | 1 | < 0.05 | bcds:HCOI01315600.t1 |
| Scaffold_340 | 169,075 | 1 | < 0.05 | cds:HCOI01315600.t1 |
| Scaffold_3511 | 5425 | 1 | < 0.05 | bcds:HCOI01200700.t1 |
| Scaffold_3558 | 3252 | 1 | < 0.05 | cds:HCOI01210600.t1 |
| Scaffold_3989 | 17,378 | 1 | < 0.05 | cds:HCOI01318200.t3 |
| Scaffold_4175 | 4946 | 1 | < 0.05 | bcds:HCOI01355700.t1 |
| Scaffold_4362 | 13,965 | 1 | < 0.05 | bcds:HCOI00703000.t1 |
| Scaffold_4362 | 13,975 | 1 | < 0.05 | cds:HCOI00703000.t1 |
| Scaffold_4362 | 13,977 | 1 | < 0.05 | cds:HCOI00703000.t1 |
| Scaffold_645 | 29,323 | 0.784867758 | < 0.05 | cds:HCOI01894100.t1 |
| Scaffold_6841 | 192 | 1 | < 0.05 | cds:HCOI01753600.t1 |
| Scaffold_774 | 42,481 | 1 | < 0.05 | bcds:HCOI02035600.t2 |
| Scaffold_793 | 2897 | 0.465277778 | 0.16 | bcds:HCOI02054500.t1 |
aBase position of SNP loci located in a given scaffold
bThe SNPs that are resistant strain-specific and only present in a resistant strain