Skip to main content
. 2004 Oct 11;101(42):15255–15260. doi: 10.1073/pnas.0404231101

Table 2. Summary statistics of sequence variation and Tajima's D.

Total
Silent
NS*
Locus L* S τw π L S 95% CI τw π L S 95% CI τw π D
pal 433 6 0.00344 0.00197 231 6 0-13 0.00645 0.00370 202 0 0-5 0.00000 0 −1.20
c4h-1 2,478 40 0.00401 0.00308 1,365 36 16-67 0.00655 0.00463 1113 4 0-11 0.00089 0.00118 −0.85
c4h-2 522 11 0.00523 0.00489 125 9 0-8 0.01788 0.01887 397 2 0-5 0.00125 0.00046 −0.21
4cl 2,299 41 0.00443 0.00594 1,284 39 15-64 0.00754 0.01050 1015 2 0-10 0.00049 0.00018 1.25
c3h 2,268 6 0.00068 0.00027 1,131 4 12-55 0.00091 0.00042 1137 2 0-11 0.00045 0.00013 −1.73
ccoaomt 501 12 0.00595 0.01200 304 12 1-17 0.00980 0.01975 197 0 0-3 0.00000 0 2.81
ccr 865 21 0.00603 0.00524 580 21 5-30 0.00899 0.00782 285 0 0-4 0.00000 0 −0.45
comt-2 1,256 15 0.00297 0.00324 458 10 3-24 0.00542 0.00618 798 5 0-8 0.00156 0.00154 0.30
cad 440 6 0.00350 0.00602 186 5 0-11 0.00691 0.01147 254 1 0-4 0.00101 0.00203 2.09
sam-1 735 12 0.00405 0.00220 420 12 3-23 0.00709 0.00385 315 0 0-4 0.00000 0 −1.62
sam-2 461 3 0.00162 0.00220 226 3 0-13 0.00330 0.00447 235 0 0-4 0.00000 0 0.83
glyhmt 536 13 0.00602 0.00647 396 13 2-21 0.00815 0.00876 140 0 0-3 0.00000 0 0.24
ptlim1 425 3 0.00175 0.00058 326 3 1-18 0.00229 0.00075 99 0 0-2 0.00000 0 −1.55
ptlim2 449 5 0.00277 0.00095 321 4 1-18 0.00309 0.00078 128 1 0-2 0.00194 0.00137 −1.76
cesA3 1,023 9 0.00218 0.00087 513 9 4-27 0.00436 0.00173 510 0 0-6 0.00000 0 −1.84
agp-like 886 7 0.00196 0.00157 423 6 3-23 0.00352 0.00314 463 1 0-6 0.00054 0.00014 −0.58
agp-4 365 24 0.01633 0.01728 226 16 0-13 0.01758 0.01274 139 8 0-3 0.01429 0.02463 0.21
agp-6 866 34 0.00975 0.01086 433 25 3-23 0.01434 0.01727 433 9 0-5 0.00516 0.00446 0.19
α-tubulin 772 20 0.00643 0.00351 555 20 4-29 0.00895 0.00488 217 0 0-3 0.00000 0 −1.56
Total 17,580 288 9,503 253 8,077 35
Weighted average 0.00407 0.00398 0.00658 0.00640 0.00108 0.00114

NS, nonsynonymous sites; CI, confidence interval.

*

Length of sequence excluding indels.

Number of segregating sites.

Tajima's D.