Table 2. Summary statistics of sequence variation and Tajima's D.
| Total
|
Silent
|
NS*
|
|||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | L* | S† | τw | π | L | S | 95% CI | τw | π | L | S | 95% CI | τw | π | D‡ |
| pal | 433 | 6 | 0.00344 | 0.00197 | 231 | 6 | 0-13 | 0.00645 | 0.00370 | 202 | 0 | 0-5 | 0.00000 | 0 | −1.20 |
| c4h-1 | 2,478 | 40 | 0.00401 | 0.00308 | 1,365 | 36 | 16-67 | 0.00655 | 0.00463 | 1113 | 4 | 0-11 | 0.00089 | 0.00118 | −0.85 |
| c4h-2 | 522 | 11 | 0.00523 | 0.00489 | 125 | 9 | 0-8 | 0.01788 | 0.01887 | 397 | 2 | 0-5 | 0.00125 | 0.00046 | −0.21 |
| 4cl | 2,299 | 41 | 0.00443 | 0.00594 | 1,284 | 39 | 15-64 | 0.00754 | 0.01050 | 1015 | 2 | 0-10 | 0.00049 | 0.00018 | 1.25 |
| c3h | 2,268 | 6 | 0.00068 | 0.00027 | 1,131 | 4 | 12-55 | 0.00091 | 0.00042 | 1137 | 2 | 0-11 | 0.00045 | 0.00013 | −1.73 |
| ccoaomt | 501 | 12 | 0.00595 | 0.01200 | 304 | 12 | 1-17 | 0.00980 | 0.01975 | 197 | 0 | 0-3 | 0.00000 | 0 | 2.81 |
| ccr | 865 | 21 | 0.00603 | 0.00524 | 580 | 21 | 5-30 | 0.00899 | 0.00782 | 285 | 0 | 0-4 | 0.00000 | 0 | −0.45 |
| comt-2 | 1,256 | 15 | 0.00297 | 0.00324 | 458 | 10 | 3-24 | 0.00542 | 0.00618 | 798 | 5 | 0-8 | 0.00156 | 0.00154 | 0.30 |
| cad | 440 | 6 | 0.00350 | 0.00602 | 186 | 5 | 0-11 | 0.00691 | 0.01147 | 254 | 1 | 0-4 | 0.00101 | 0.00203 | 2.09 |
| sam-1 | 735 | 12 | 0.00405 | 0.00220 | 420 | 12 | 3-23 | 0.00709 | 0.00385 | 315 | 0 | 0-4 | 0.00000 | 0 | −1.62 |
| sam-2 | 461 | 3 | 0.00162 | 0.00220 | 226 | 3 | 0-13 | 0.00330 | 0.00447 | 235 | 0 | 0-4 | 0.00000 | 0 | 0.83 |
| glyhmt | 536 | 13 | 0.00602 | 0.00647 | 396 | 13 | 2-21 | 0.00815 | 0.00876 | 140 | 0 | 0-3 | 0.00000 | 0 | 0.24 |
| ptlim1 | 425 | 3 | 0.00175 | 0.00058 | 326 | 3 | 1-18 | 0.00229 | 0.00075 | 99 | 0 | 0-2 | 0.00000 | 0 | −1.55 |
| ptlim2 | 449 | 5 | 0.00277 | 0.00095 | 321 | 4 | 1-18 | 0.00309 | 0.00078 | 128 | 1 | 0-2 | 0.00194 | 0.00137 | −1.76 |
| cesA3 | 1,023 | 9 | 0.00218 | 0.00087 | 513 | 9 | 4-27 | 0.00436 | 0.00173 | 510 | 0 | 0-6 | 0.00000 | 0 | −1.84 |
| agp-like | 886 | 7 | 0.00196 | 0.00157 | 423 | 6 | 3-23 | 0.00352 | 0.00314 | 463 | 1 | 0-6 | 0.00054 | 0.00014 | −0.58 |
| agp-4 | 365 | 24 | 0.01633 | 0.01728 | 226 | 16 | 0-13 | 0.01758 | 0.01274 | 139 | 8 | 0-3 | 0.01429 | 0.02463 | 0.21 |
| agp-6 | 866 | 34 | 0.00975 | 0.01086 | 433 | 25 | 3-23 | 0.01434 | 0.01727 | 433 | 9 | 0-5 | 0.00516 | 0.00446 | 0.19 |
| α-tubulin | 772 | 20 | 0.00643 | 0.00351 | 555 | 20 | 4-29 | 0.00895 | 0.00488 | 217 | 0 | 0-3 | 0.00000 | 0 | −1.56 |
| Total | 17,580 | 288 | 9,503 | 253 | 8,077 | 35 | |||||||||
| Weighted average | 0.00407 | 0.00398 | 0.00658 | 0.00640 | 0.00108 | 0.00114 | |||||||||
NS, nonsynonymous sites; CI, confidence interval.
Length of sequence excluding indels.
Number of segregating sites.
Tajima's D.