Skip to main content
. 2017 Jan 17;4:160132. doi: 10.1038/sdata.2016.132

Table 3. Assembly statistics for all species in the reported data set (Data Citation 2).

Species Genome size* (Mb) Coverage N50 contigs length (bp) N50 scaffold length (bp) Total span of scaffolds (Mb) Recovered
Osmerus eperlanus 489 19.16 4,524 6,798 342 70%
Borostomias antarcticus 865 18.91 3,928 5,352 429 50%
Parasudis fraserbrunneri 935 19.55 4,177 6,366 706 76%
Guentherus altivela 1,701 8.73 2,928 3,199 538 32%
Benthosema glaciale 1,304 19.54 4,393 6,091 674 52%
Polymixia japonica 635 18.09 5,803 9,534 553 87%
Percopsis transmontana 509 35.57 8,161 15,134 457 90%
Typhlichthys subterraneus 759 22.85 7,314 9,640 555 73%
Zeus faber 732 22.92 4,642 6,313 609 83%
Cyttopsis roseus 640 28.14 4,843 7,060 545 85%
Stylephorus chordatus 971 23.04 3,373 4,661 487 50%
Bregmaceros cantori 1,650 23.60 4,452 5,909 1,142 69%
Merluccius polli 609 22.35 3,471 4,468 400 66%
Merluccius merluccius 611 29.65 3,670 5,094 400 66%
Merluccius capensis 653 19.89 3,792 4,760 413 63%
Melanonus zugmayeri 589 37.09 4,562 7,599 432 73%
Muraenolepis marmoratus 840 18.19 3,126 3,549 415 49%
Trachyrincus scabrus 579 37.96 3,900 6,346 369 64%
Trachyrincus murrayi 678 26.47 6,231 19,931 450 66%
Mora moro 499 39.10 3,267 4,412 344 69%
Laemonema laureysi 524 24.28 3,431 4,696 305 58%
Bathygadus melanobranchus 577 26.32 4,956 6,466 430 75%
Macrourus berglax 693 21.18 3,353 4,278 399 58%
Malacocephalus occidentalis 504 32.68 3,697 4,907 349 69%
Phycis blennoides 674 31.24 4,532 10,570 414 61%
Phycis phycis 468 32.04 3,458 4,486 345 74%
Lota lota 512 30.51 3,803 4,876 397 78%
Molva molva 539 33.68 4,136 5,251 437 81%
Brosme brosme 551 26.78 3,682 4,636 412 75%
Trisopterus minutus 517 33.50 3,248 3,962 334 65%
Gadiculus argenteus 567 29.03 3,379 3,942 396 70%
Pollachius virens 513 25.84 3,457 4,331 394 77%
Melanogrammus aeglefinus 543 25.17 3,215 3,690 374 69%
Merlangius merlangus 566 37.16 3,538 4,430 423 75%
Arctogadus glacialis 646 27.54 3,282 3,696 429 66%
Boreogadus saida 641 30.48 3,221 3,566 412 64%
Theragra chalcogramma 661 29.43 3,603 4,323 448 68%
Gadus morhua 674 25.86 5,765 16,731 492 73%
Regalecus glesne 750 30.64 6,781 9,753 654 87%
Lampris guttatus 1,405 14.20 4,051 5,212 847 60%
Monocentris japonica 706 16.71 8,046 18,610 554 79%
Myripristis jacobus 778 20.75 9,816 21,260 719 92%
Holocentrus rufus 735 20.72 9,243 21,323 648 88%
Neoniphon sammara 696 16.96 8,761 21,687 657 94%
Beryx splendens 897 14.64 4,286 5,972 532 59%
Rondeletia loricata 1,049 16.21 5,112 7,444 567 54%
Acanthochaenus luetkenii 825 21.10 5,636 8,398 544 66%
Brotula barbata 519 30.96 17,578 45,713 484 93%
Lamprogrammus exutus 901 9.80 4,213 5,459 492 55%
Carapus acus 448 27.21 9,554 16,897 387 86%
Chatrabus melanurus 1,965 20.79 4,581 5,906 1,126 57%
Thunnus albacares 836 18.60 16,808 46,871 726 87%
Lesueurigobius cf. sanzi 1,349 13.57 6,729 11,439 808 60%
Perca fluviatilis 903 12.51 4,140 5,951 629 70%
Myoxocephalus scorpius 759 16.64 5,716 9,443 518 68%
Sebastes norvegicus 782 20.04 9,467 16,530 716 92%
Chaenocephalus aceratus 1,050 35.91 5,460 7,309 623 59%
Symphodus melops 628 17.80 9,362 21,217 533 85%
Spondyliosoma cantharus 767 17.19 11,633 28,109 679 89%
Antennarius striatus 552 13.78 6,086 9,743 441 80%
Selene dorsalis 576 24.13 11,209 32,351 527 92%
Helostoma temminckii 686 16.14 17,055 71,662 599 87%
Anabas testudineus 576 22.08 18,817 50,098 524 91%
Parablennius parvicornis 623 30.04 7,343 16,734 598 96%
Chromis chromis 907 23.88 8,509 14,185 832 92%
Pseudochromis fuscus 740 19.39 12,029 24,629 656 89%

*Estimated by Celera Assembler

Based on Celera Assembler genome estimation

Span of scaffolds divided by estimated genome size