Table 3. Assembly statistics for all species in the reported data set (Data Citation 2).
Species | Genome size* (Mb) | Coverage† | N50 contigs length (bp) | N50 scaffold length (bp) | Total span of scaffolds (Mb) | Recovered‡ |
---|---|---|---|---|---|---|
Osmerus eperlanus | 489 | 19.16 | 4,524 | 6,798 | 342 | 70% |
Borostomias antarcticus | 865 | 18.91 | 3,928 | 5,352 | 429 | 50% |
Parasudis fraserbrunneri | 935 | 19.55 | 4,177 | 6,366 | 706 | 76% |
Guentherus altivela | 1,701 | 8.73 | 2,928 | 3,199 | 538 | 32% |
Benthosema glaciale | 1,304 | 19.54 | 4,393 | 6,091 | 674 | 52% |
Polymixia japonica | 635 | 18.09 | 5,803 | 9,534 | 553 | 87% |
Percopsis transmontana | 509 | 35.57 | 8,161 | 15,134 | 457 | 90% |
Typhlichthys subterraneus | 759 | 22.85 | 7,314 | 9,640 | 555 | 73% |
Zeus faber | 732 | 22.92 | 4,642 | 6,313 | 609 | 83% |
Cyttopsis roseus | 640 | 28.14 | 4,843 | 7,060 | 545 | 85% |
Stylephorus chordatus | 971 | 23.04 | 3,373 | 4,661 | 487 | 50% |
Bregmaceros cantori | 1,650 | 23.60 | 4,452 | 5,909 | 1,142 | 69% |
Merluccius polli | 609 | 22.35 | 3,471 | 4,468 | 400 | 66% |
Merluccius merluccius | 611 | 29.65 | 3,670 | 5,094 | 400 | 66% |
Merluccius capensis | 653 | 19.89 | 3,792 | 4,760 | 413 | 63% |
Melanonus zugmayeri | 589 | 37.09 | 4,562 | 7,599 | 432 | 73% |
Muraenolepis marmoratus | 840 | 18.19 | 3,126 | 3,549 | 415 | 49% |
Trachyrincus scabrus | 579 | 37.96 | 3,900 | 6,346 | 369 | 64% |
Trachyrincus murrayi | 678 | 26.47 | 6,231 | 19,931 | 450 | 66% |
Mora moro | 499 | 39.10 | 3,267 | 4,412 | 344 | 69% |
Laemonema laureysi | 524 | 24.28 | 3,431 | 4,696 | 305 | 58% |
Bathygadus melanobranchus | 577 | 26.32 | 4,956 | 6,466 | 430 | 75% |
Macrourus berglax | 693 | 21.18 | 3,353 | 4,278 | 399 | 58% |
Malacocephalus occidentalis | 504 | 32.68 | 3,697 | 4,907 | 349 | 69% |
Phycis blennoides | 674 | 31.24 | 4,532 | 10,570 | 414 | 61% |
Phycis phycis | 468 | 32.04 | 3,458 | 4,486 | 345 | 74% |
Lota lota | 512 | 30.51 | 3,803 | 4,876 | 397 | 78% |
Molva molva | 539 | 33.68 | 4,136 | 5,251 | 437 | 81% |
Brosme brosme | 551 | 26.78 | 3,682 | 4,636 | 412 | 75% |
Trisopterus minutus | 517 | 33.50 | 3,248 | 3,962 | 334 | 65% |
Gadiculus argenteus | 567 | 29.03 | 3,379 | 3,942 | 396 | 70% |
Pollachius virens | 513 | 25.84 | 3,457 | 4,331 | 394 | 77% |
Melanogrammus aeglefinus | 543 | 25.17 | 3,215 | 3,690 | 374 | 69% |
Merlangius merlangus | 566 | 37.16 | 3,538 | 4,430 | 423 | 75% |
Arctogadus glacialis | 646 | 27.54 | 3,282 | 3,696 | 429 | 66% |
Boreogadus saida | 641 | 30.48 | 3,221 | 3,566 | 412 | 64% |
Theragra chalcogramma | 661 | 29.43 | 3,603 | 4,323 | 448 | 68% |
Gadus morhua | 674 | 25.86 | 5,765 | 16,731 | 492 | 73% |
Regalecus glesne | 750 | 30.64 | 6,781 | 9,753 | 654 | 87% |
Lampris guttatus | 1,405 | 14.20 | 4,051 | 5,212 | 847 | 60% |
Monocentris japonica | 706 | 16.71 | 8,046 | 18,610 | 554 | 79% |
Myripristis jacobus | 778 | 20.75 | 9,816 | 21,260 | 719 | 92% |
Holocentrus rufus | 735 | 20.72 | 9,243 | 21,323 | 648 | 88% |
Neoniphon sammara | 696 | 16.96 | 8,761 | 21,687 | 657 | 94% |
Beryx splendens | 897 | 14.64 | 4,286 | 5,972 | 532 | 59% |
Rondeletia loricata | 1,049 | 16.21 | 5,112 | 7,444 | 567 | 54% |
Acanthochaenus luetkenii | 825 | 21.10 | 5,636 | 8,398 | 544 | 66% |
Brotula barbata | 519 | 30.96 | 17,578 | 45,713 | 484 | 93% |
Lamprogrammus exutus | 901 | 9.80 | 4,213 | 5,459 | 492 | 55% |
Carapus acus | 448 | 27.21 | 9,554 | 16,897 | 387 | 86% |
Chatrabus melanurus | 1,965 | 20.79 | 4,581 | 5,906 | 1,126 | 57% |
Thunnus albacares | 836 | 18.60 | 16,808 | 46,871 | 726 | 87% |
Lesueurigobius cf. sanzi | 1,349 | 13.57 | 6,729 | 11,439 | 808 | 60% |
Perca fluviatilis | 903 | 12.51 | 4,140 | 5,951 | 629 | 70% |
Myoxocephalus scorpius | 759 | 16.64 | 5,716 | 9,443 | 518 | 68% |
Sebastes norvegicus | 782 | 20.04 | 9,467 | 16,530 | 716 | 92% |
Chaenocephalus aceratus | 1,050 | 35.91 | 5,460 | 7,309 | 623 | 59% |
Symphodus melops | 628 | 17.80 | 9,362 | 21,217 | 533 | 85% |
Spondyliosoma cantharus | 767 | 17.19 | 11,633 | 28,109 | 679 | 89% |
Antennarius striatus | 552 | 13.78 | 6,086 | 9,743 | 441 | 80% |
Selene dorsalis | 576 | 24.13 | 11,209 | 32,351 | 527 | 92% |
Helostoma temminckii | 686 | 16.14 | 17,055 | 71,662 | 599 | 87% |
Anabas testudineus | 576 | 22.08 | 18,817 | 50,098 | 524 | 91% |
Parablennius parvicornis | 623 | 30.04 | 7,343 | 16,734 | 598 | 96% |
Chromis chromis | 907 | 23.88 | 8,509 | 14,185 | 832 | 92% |
Pseudochromis fuscus | 740 | 19.39 | 12,029 | 24,629 | 656 | 89% |
*Estimated by Celera Assembler
†Based on Celera Assembler genome estimation
‡Span of scaffolds divided by estimated genome size