Table 5. Gene space completeness metrics for all draft assemblies in this data set (Data Citation 2).
| Species | CEGMA complete* | CEGMA partial* | BUSCO complete† | BUSCO duplicated† | BUSCO fragmented† | BUSCO missing† |
|---|---|---|---|---|---|---|
| Osmerus eperlanus | 175 | 220 | 2,071 | 71 | 760 | 867 |
| Borostomias antarcticus | 116 | 180 | 1,101 | 37 | 869 | 1,728 |
| Parasudis fraserbrunneri | 131 | 205 | 1,625 | 63 | 880 | 1,193 |
| Guentherus altivela | 44 | 119 | 402 | 11 | 809 | 2,487 |
| Benthosema glaciale | 171 | 214 | 1,478 | 128 | 768 | 1,452 |
| Polymixia japonica | 188 | 230 | 2,474 | 80 | 663 | 561 |
| Percopsis transmontana | 185 | 233 | 2,411 | 71 | 639 | 648 |
| Typhlichthys subterraneus | 167 | 222 | 2,024 | 55 | 763 | 911 |
| Zeus faber | 155 | 219 | 1,758 | 48 | 917 | 1,023 |
| Cyttopsis roseus | 185 | 233 | 1,969 | 62 | 867 | 862 |
| Stylephorus chordatus | 125 | 193 | 1,189 | 39 | 926 | 1,583 |
| Bregmaceros cantori | 85 | 189 | 867 | 32 | 942 | 1,889 |
| Merluccius polli | 133 | 204 | 1,188 | 44 | 1,019 | 1,491 |
| Merluccius merluccius | 147 | 210 | 1,257 | 36 | 959 | 1,482 |
| Merluccius capensis | 144 | 209 | 1,363 | 38 | 986 | 1,349 |
| Melanonus zugmayeri | 163 | 218 | 1,803 | 56 | 895 | 1,000 |
| Muraenolepis marmoratus | 143 | 209 | 1,258 | 37 | 1,040 | 1,400 |
| Trachyrincus scabrus | 190 | 225 | 1,957 | 45 | 872 | 869 |
| Trachyrincus murrayi | 218 | 235 | 2,806 | 69 | 464 | 428 |
| Mora moro | 155 | 215 | 1,582 | 40 | 948 | 1,168 |
| Laemonema laureysi | 163 | 223 | 1,814 | 41 | 844 | 1,040 |
| Bathygadus melanobranchus | 179 | 223 | 2,026 | 60 | 831 | 841 |
| Macrourus berglax | 147 | 206 | 1,172 | 61 | 927 | 1,599 |
| Malacocephalus occidentalis | 147 | 210 | 1,419 | 40 | 996 | 1,283 |
| Phycis blennoides | 190 | 231 | 2,155 | 44 | 717 | 826 |
| Phycis phycis | 144 | 213 | 1,461 | 36 | 966 | 1,271 |
| Lota lota | 169 | 213 | 1,740 | 49 | 902 | 1,056 |
| Molva molva | 172 | 218 | 1,739 | 61 | 939 | 1,020 |
| Brosme brosme | 167 | 215 | 1,712 | 36 | 907 | 1,079 |
| Trisopterus minutus | 138 | 189 | 1,199 | 39 | 917 | 1,582 |
| Gadiculus argenteus | 119 | 195 | 1,193 | 26 | 958 | 1,547 |
| Pollachius virens | 147 | 208 | 1,405 | 35 | 968 | 1,325 |
| Melanogrammus aeglefinus | 145 | 201 | 1,356 | 41 | 996 | 1,346 |
| Merlangius merlangus | 136 | 195 | 1,429 | 39 | 946 | 1,323 |
| Arctogadus glacialis | 141 | 199 | 1,177 | 34 | 1,036 | 1,485 |
| Boreogadus saida | 137 | 205 | 1,261 | 43 | 955 | 1,482 |
| Theragra chalcogramma | 153 | 210 | 1,486 | 36 | 971 | 1,241 |
| Gadus morhua | 202 | 235 | 2,455 | 43 | 608 | 635 |
| Regalecus glesne | 184 | 234 | 2,228 | 70 | 675 | 795 |
| Lampris guttatus | 129 | 201 | 1,467 | 47 | 953 | 1,278 |
| Monocentris japonica | 199 | 235 | 2,709 | 74 | 545 | 444 |
| Myripristis jacobus | 200 | 230 | 2,844 | 102 | 461 | 393 |
| Holocentrus rufus | 202 | 233 | 2,944 | 97 | 441 | 313 |
| Neoniphon sammara | 195 | 228 | 2,742 | 81 | 505 | 451 |
| Beryx splendens | 152 | 197 | 1,638 | 58 | 941 | 1,119 |
| Rondeletia loricata | 140 | 204 | 1,828 | 62 | 921 | 949 |
| Acanthochaenus luetkenii | 138 | 219 | 1,736 | 59 | 936 | 1,026 |
| Brotula barbata | 230 | 243 | 3,278 | 97 | 247 | 173 |
| Lamprogrammus exutus | 146 | 211 | 1,692 | 77 | 1,011 | 995 |
| Carapus acus | 215 | 240 | 2,666 | 52 | 505 | 527 |
| Chatrabus melanurus | 92 | 188 | 1,142 | 36 | 1,091 | 1,465 |
| Thunnus albacares | 209 | 236 | 3,147 | 99 | 351 | 200 |
| Lesueurigobius cf. sanzi | 163 | 206 | 2,130 | 58 | 625 | 943 |
| Perca fluviatilis | 122 | 189 | 1,673 | 55 | 1,027 | 998 |
| Myoxocephalus scorpius | 164 | 217 | 2,016 | 69 | 803 | 879 |
| Sebastes norvegicus | 190 | 233 | 2,458 | 69 | 698 | 542 |
| Chaenocephalus aceratus | 146 | 199 | 1,918 | 63 | 876 | 904 |
| Symphodus melops | 199 | 229 | 2,755 | 76 | 537 | 406 |
| Spondyliosoma cantharus | 215 | 240 | 3,001 | 78 | 426 | 271 |
| Antennarius striatus | 195 | 226 | 2,312 | 73 | 656 | 730 |
| Selene dorsalis | 215 | 231 | 2,968 | 80 | 427 | 303 |
| Helostoma temminckii | 225 | 236 | 3,387 | 100 | 204 | 107 |
| Anabas testudineus | 225 | 240 | 3,314 | 110 | 245 | 139 |
| Parablennius parvicornis | 186 | 224 | 2,336 | 63 | 650 | 712 |
| Chromis chromis | 180 | 230 | 2,451 | 75 | 670 | 577 |
| Pseudochromis fuscus | 210 | 231 | 2,837 | 90 | 475 | 386 |
*Out of 248 highly conserved eukaryotic genes.
†Out of 3,698 highly conserved acanthopterygian genes.