Table 3. Differentially induced F. virguliforme genes that are predicted to encode secretory proteins during early and late infection stages.
| Gene name | Sequence description | Fold Change | |||
| 1Early | 1Late | 2Early/Late | 3R/C values | ||
| g11354 | Hypothetical protein AFLA_059330 | 82.7 | 7.7 | 10.7 | 2 |
| g13527 | Extracellular matrix protein precursor | 5.2 | 1 | 5.2 | 1 |
| g10823 | Unknown | 115.3 | 33.8 | 3.4 | 2 |
| g9652 | Triacylglycerol lipase | 16.7 | 5.5 | 3 | 1 |
| g35 | Unknown | 24.2 | 8.3 | 2.9 | 1 |
| g13651 | Acetolactate synthas | 5 | 1.8 | 2.9 | 3 |
| Gene name | Sequence description | Fold Change | 3R/C values | ||
| 1Early | 1Late | 2Late/Early | |||
| g4306 | Pectate lyase c | 0.9 | 33.2 | 38.1 | 1 |
| g14206 | Glycoside hydrolase family 43 protein | 0.8 | 12.7 | 15.1 | 1 |
| g13672 | Cell wall glycosyl hydrolase | 0.9 | 11.6 | 12.5 | 1 |
| g13332 | Lipolytic protein g-d-s-l family | 1 | 12.4 | 12.4 | 3 |
| g10242 | Endoglucanase iv precursor | 0.9 | 10.7 | 12.1 | 2 |
| g10829 | Expansin-like protein | 1 | 11.7 | 11.7 | 1 |
| g14123 | Pectate lyase | 1 | 11.1 | 11.1 | 1 |
| g11732 | Glycoside hydrolase family 10 protein | 0.9 | 6.3 | 6.9 | 1 |
| g12142 | Glycoside hydrolase family 5 protein | 2.1 | 11.6 | 5.4 | 4 |
| g2034 | Hypothetical protein NECHADRAFT_99942 | 1 | 5.4 | 5.4 | 5 |
| g10874 | Sugar transporter stl1 | 1.7 | 7.3 | 4.4 | 4 |
| g3939 | Para-nitrobenzyl esterase | 1 | 3.5 | 3.5 | 1 |
| g13138 | Glycoside hydrolase family 115 protein | 1.3 | 3.9 | 3 | 1 |
| g12597 | Cytochrome p450 monooxygenase | 1 | 2.9 | 2.9 | 2 |
| g225 | Xylosidase: arabinofuranosidase | 2.4 | 6.5 | 2.8 | 1 |
| g3691 | Nitrate reductase | 2.3 | 6 | 2.6 | 2 |
| g218 | Exopolygalacturonase | 2.1 | 4.4 | 2.1 | 1 |
| g14347 | Saponin hydrolase precursor | 2.4 | 4.8 | 2 | 1 |
| g10894 | Hexose carrier protein | 1.7 | 3.4 | 2 | 1 |
| g228 | Hypothetical protein FOXB_14459 | 1.7 | 3.4 | 2 | 1 |
1Fold changes in expression levels during early and late stages are calculated against the mean RPKM values of individual genes in germinating conidia and mycelia.
2Minimum of two-fold differences in expression levels between early and late infection stages are presented. Rest of the genes encoding putative secretory peptides or proteins can be found in S4 Table.
3RC values are confidence scores for secretory protein prediction. RC value 1 indicates highest confidence; while 5 the lowest.