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. Author manuscript; available in PMC: 2018 Jan 1.
Published in final edited form as: J Comput Aided Mol Des. 2016 Sep 22;31(1):1–19. doi: 10.1007/s10822-016-9974-4

Table 1.

Experimental standard binding affinities (ΔG°) of OAH, OAMe and CBClip (1 M standard concentration) used as references for SAMPL5 host-guest affinity predictions. All binding affinities discussed in the present work denote standard binding affinities

Compd ID Technique Buffer Conc (mM) Ka (M−1)a ΔG° (kcal/mol)b Uncertainty (kcal/mol)
OAHc
    OA-G1 NMR 10 (5.00 ± 0.07) × 103 −5.04 0.01
    OA-G2 NMR 10 (1.31 ± 0.04) × 103 −4.25 0.01
    OA-G3 NMR 10 (5.16 ± 0.09) × 103 −5.06 0.01
    OA-G4 ITC 50 (7.43 ± 0.04) × 106 −9.37 0.00
    OA-G5 NMR 10 (1.996 ± 0.005) × 103 −4.50 0.00
    OA-G6 ITC 50 (8.15 ± 0.07) × 103 −5.33 0.00
OAMec
    OA-G1 NMR 10 (6.94 ± 0.76) × 103 −5.24 0.05
    OA-G2 NMR 10 (4.96 ± 0.37) × 103 −5.04 0.03
    OA-G3 NMR 10 (2.31 ± 0.66) × 104 −5.94 0.12
    OA-G4d NMR 10 (5.58 ± 0.28) × 101 −2.38 0.02
    OA-G5 NMR 10 (7.29 ± 0.33) × 102 −3.90 0.02
    OA-G6 ITC 50 (2.05 ± 0.10) × 103 −4.52 0.02
CBClip
    CBC-G1 NMR 20 (1.9 ± 0.1) × 104 −5.83 0.03
    CBC-G2 NMR 20 70 ± 8 −2.51 0.07
    CBC-G3 NMR 20 (8.8 ± 0.5) × 102 −4.02 0.03
    CBC-G4 UV/VIS 20 (2.0 ± 0.1) × 105 −7.24 0.03
    CBC-G5 UV/VIS 20 (1.8 ± 0.2) × 106 −8.53 0.07
    CBC-G6e UV/VIS 20 (2.2 ± 0.2) × 106 −8.64 0.05
    CBC-G7 UV/VIS 20 (6.2 ± 0.2) × 103 −5.17 0.02
    CBC-G8 UV/VIS 20 (3.3 ± 0.2) × 104 −6.17 0.04
    CBC-G9 UV/VIS 20 (2.6 ± 0.1) × 105 −7.39 0.02
    CBC-G10f Fluorescence 20 (3.9 ± 0.2) × 107 −10.35 0.03
a

All Ka values are reported as mean ± standard deviation (SD), where the SD was computed from the experimental replicates

b

The uncertainties of experimental ΔG° values are reported as standard error of the mean (SEM), obtained from the experimental replicates of Ka (see Table S1)

c

For the complete set of NMR and ITC data for OAH/OAMe systems, please see ref [37]

d

Ka values were measured at 298 K except OAMe-G4 was measured at 278 K

e

The binding constant of CBClip-G6 measured by fluorescence titration is (2.3 ± 0.2) × 106 M−1

f

The binding constant of CBClip-G10 is (2.4 ± 0.4) × 107 M−1 measured by UV/Vis titration and (6.6 ± 0.7) × 107 M−1 measured by UV/Vis competition assay