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. 2017 Jan 18;8:6. doi: 10.3389/fmicb.2017.00006

Table 1.

Allelic types and Hunter-Gaston diversity index (HGDI) of B. melitensis for 16 loci in this study.

Panel and Locus Diversity Index Confidence Interval K Max (pi)
bruce06 0.000 0.000–0.061 1 1.000
bruce08 0.000 0.000–0.061 1 1.000
bruce11 0.000 0.000–0.061 1 1.000
bruce12 0.000 0.000–0.061 1 1.000
bruce42 0.000 0.000–0.061 1 1.000
bruce43 0.235 0.137–0.333 3 0.871
bruce45 0.000 0.000–0.061 1 1.000
bruce55 0.017 0.000–0.050 2 0.991
Bruce18 0.000 0.000–0.061 1 1.000
bruce19 0.115 0.038–0.193 3 0.940
bruce21 0.034 0.000–0.080 2 0.983
Panel 2A 0.147 0.061–0.233 4 0.922
bruce04 0.841 0.816–0.866 8 0.250
bruce07 0.084 0.015–0.153 3 0.957
bruce09 0.034 0.000–0.080 3 0.983
bruce16 0.791 0.748–0.834 11 0.328
bruce30 0.690 0.643–0.737 6 0.440
Panel 2B 0.983 0.976–0.989 62 0.069
MLVA-16 0.985 0.979–0.992 69 0.069
MLVA-8 0.235 0.137–0.333 3 0.871
MLVA-11 0.337 0.228–0.447 8 0.810

Diversity Index (for VNTR data), A measure of the variation of the number of repeats at each locus. Ranges from 0.0 (no diversity) to 1.0 (complete diversity).

Confidence Interval, Precision of the Diversity Index, expressed as 95% upper and lower boundaries.

K, Number of different repeats present at this locus in this sample set.

Max (pi), Fraction of samples that have the most frequent repeat number in this locus (range 0.0–1.0).