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. 2017 Jan 18;7:40731. doi: 10.1038/srep40731

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Condensed phylogenetic trees of (A) VP1, (B) VP2, (C) VP3, (D) VP6, (E) NSP1, (F) NSP2, (G) NSP3, (H) NSP4, and (I) NSP5 were constructed with MEGA6 using neighbor-joining (maximum composite likelihood) or maximum likelihood method with 1,000 bootstrap replicates using the best-fit substitution models determined by the built-in model test application: GTR = General Time Reversible, T92 = Tamura 92, HKY = Hasegawa-Kishino-Yano 85, TN93 = Tamura-Nei 93, G = gamme sites, I = invariant sites. The region within each of the gene segment used for each analysis is also shown. Open circles indicate Taiwanese human strains, closed circles denote Taiwanese porcine strains from 2015, open diamonds denote Taiwanese porcine strains from 2014.