Table 1.
RNA concentrations and read number after RNA-seq using RNA isolated from partially dissected endosperm (with testa still attached to the endosperm), fully dissected endosperm, and testa.
Sample | RNA concentration ng/µl in 50 µl volume | Total amount of RNA (ng) | Volume of RNA sample used for library preparation (µl) | cDNA library (ng/µl) | Volume of library used for sequencing | Total mapped sequencing reads |
---|---|---|---|---|---|---|
Partially dissected endosperm_A | 5 | 250 | 40 | 37.4 | 1.16 | 39,097,682 |
Partially dissected endosperm_B | 6.4 | 320 | 31.25 | 15.2 | 2.5 | 31,930,392 |
Fully dissected endosperm_A | 7 | 350 | 28.57 | 16.4 | 2.5 | 39,862,912 |
Fully dissected endosperm_B | 4.4 | 220 | 45.45 | 15.8 | 2.5 | 35,254,459 |
Testa_A | 0 | 0 | 45.45 | 0.37 | 2.5 | 264,057 |
Testa_B | 0 | 0 | 45.45 | 0.59 | 2.5 | 595,710 |