Table 2.
Taxonomic distribution of organisms showing multiplicity of AHL-acylase
| Organism | Enzyme | CDa | GI No: |
|---|---|---|---|
| Gram-negative | |||
| Betaproteobacteria | |||
| Ralstonia sp. XJ12Ba | AHL-acylase | Partial (P(2)) | gi|28376389|gb|AAO41113.1| |
| Ralstonia eutropha JMP134b | Penicillin amidase (PAM) | P | gi|73541530|ref|YP_296050.1| |
| R. eutropha H16b | PAM or acylase (PAC) | P(2) | gi|113867898|ref|YP_726387.1| |
| R. pickettii 12Jb | Peptidase S45, PAM | P(2) | gi|187929893|ref|YP_001900380.1| |
| R. solanacearum GMI1000b | Aculeacin A acylase | P(2) | gi|17547266|ref|NP_520668.1| |
| R. metallidurans CH34b | Peptidase S45, PAM | P(2) | gi|94313782|ref|YP_586991.1| |
| R. pickettii 12D | Peptidase S45, PAM | P(2) | gi|153885673|ref|ZP_02006829.1| |
| Aculeacin A acylase | P(2) | gi|153885674|ref|ZP_02006830.1| | |
| Gammaproteobacteria | |||
| Azotobacter vinelandii AvOP | Peptidase S45, PAM | P(2) | gi|67157312|ref|ZP_00418614.1| |
| P | gi|67157375|ref|ZP_00418677.1| | ||
| Pseudomonas sp. SY-77-1 | Glutaryl-7-amino-cephalosporanic-acid acylase | P(2) | gi|116242485|sp|P07662.2| |
| Chain A | P(2) | gi|47168470|pdb|1OQZ| | |
| Chain B | P | gi|47168473|pdb|1OR0|B | |
| Pseudomonas aeruginosa PAO1 | AHL acylase PvdQ | P(2) | gi|15597581|ref|NP_251075.1| |
| Hypo. protein (HP) PA1893 | P | gi|15597090|ref|NP_250584.1| | |
| P. aeruginosa PA7 | AHL acylase | P(2) | gi|152987503|ref|YP_001348236.1| |
| HP PSPA7_3392 | P | gi|152987014|ref|YP_001348752.1| | |
| Putative PAM | P | gi|152985857|ref|YP_001349702.1| | |
| P. aeruginosa PACS2 | HP PaerPA_01002361 | P | gi|107101327|ref|ZP_01365245.1| |
| HP PaerPA_01002874 | P(2) | gi|107101829|ref|ZP_01365747.1| | |
| HP PaerPA_01001501 | P | gi|107100476|ref|ZP_01364394.1| | |
| P. aeruginosa UCBPP-PA14 | PAC | P(2) | gi|116050326|ref|YP_790857.1| |
| HP PA14_40040 | P | gi|116049847|ref|YP_791346.1| | |
| PAM | P | gi|116048960|ref|YP_792238.1| | |
| P. aeruginosa 2192 | PvdQ | P(2) | gi|194551803|ref|YP_002086830.1| |
| HP PA2G_00931 | P | gi|194551272|ref|YP_002086299.1| | |
| P. aeruginosa C3719 | HP PACG_00864 | P | gi|194545971|ref|YP_002080999.1| |
| HP PACG_00002 | P | gi|194545153|ref|YP_002080181.1| | |
| PvdQ | P(2) | gi|194546375|ref|YP_002081403.1| | |
| P. entomophila L48 | PAM | P(2) | gi|104781218|ref|YP_607716.1| |
| AHL-acylase | Full (F),P | gi|104784167|ref|YP_610665.1| | |
| P. fluorescens Pf-5 | PAM | P(2) | gi|70730269|ref|YP_260008.1| |
| P | gi|70733204|ref|YP_262977.1| | ||
| P. fluorescens Pf0-1 | Peptidase S45 | P(2) | gi|77458788|ref|YP_348294.1| |
| PAM, SepQ protein | F,P | gi|77457440|ref|YP_346945.1| | |
| P. mendocina ymp b | Peptidase S45, PAM | P | gi|146309254|ref|YP_001189719.1| |
| P. putida F1 | Peptidase S45, PAM | P(2) | gi|148548004|ref|YP_001268106.1| |
| P | gi|148550271|ref|YP_001270373.1| | ||
| P. putida GB-1 | Peptidase S45, PAM | P(2) | gi|167033881|ref|YP_001669112.1| |
| P | gi|167036204|ref|YP_001671435.1| | ||
| P. putida W619 | Peptidase S45, PAM | P(2) | gi|170721584|ref|YP_001749272.1| |
| P | gi|170719488|ref|YP_001747176.1| | ||
| P. syringae pv. phaseolicola 1448Ab | PAM | P(2) | gi|71736215|ref|YP_274165.1| |
| P. syringae pv. syringae str. B728ab | Peptidase S45, PAM | P(2) | gi|66045211|ref|YP_235052.1| |
| P. syringae pv. tomato str. DC3000b | PAM | P(2) | gi|28869364|ref|NP_791983.1| |
| Shewanella benthica KT99 | Aculeacin A acylase | P(2) | gi|163749206|ref|ZP_02156456.1| |
| P(2) | gi|163749207|ref|ZP_02156457.1| | ||
| Gamma proteobacterium KT 71 | Peptidase S45, PAM | F | gi|88703935|ref|ZP_01101650.1| |
| P | gi|88706973|ref|ZP_01104671.1| | ||
| P(2) | gi|88706945|ref|ZP_01104644.1| | ||
| Marine Gamma proteobacterium HTCC2080 | Aculeacin A acylase | F, P(2) | gi|119505017|ref|ZP_01627093.1| |
| PAM | P | gi|119504715|ref|ZP_01626793.1| | |
| Deltaproteobacteria | |||
| Plesiocystis pacifica SIR-1 | PAM, PAC | F, P(2) | gi|149923822|ref|ZP_01912213.1| |
| F | gi|149917617|ref|ZP_01906114.1| | ||
| Stigmatella aurantiaca DW4/3-1 | Aculeacin A acylase | P(2) | gi|115376563|ref|ZP_01463795.1| |
| P(2) | gi|115378259|ref|ZP_01465428.1| | ||
| Gram-positive | |||
| Deinococcus | |||
| Deinococcus radiodurans R1b | Aculeacin A acylase | P(2) | gi|15807918|ref|NP_285578.1| |
| Actinobacteria | |||
| Nocardioides sp. JS614 | Peptidase S45, Penicillin Amidase (PAM) | P(2) | gi|119717562|ref|YP_924527.1| |
| P(2) | gi|119715569|ref|YP_922534.1| | ||
| Streptomyces sp. Mg1 | PAM | F, P(2) | gi|197333590|ref|ZP_03175656.1| |
| Putative acylase | F, P(2) | gi|197754175|ref|YP_002177538.1| | |
| Streptomyces griseus subsp. griseus NBRC 13350 | PAM | P(2) | gi|182440602|ref|YP_001828321.1| |
| Putative acylase | P | gi|182438087|ref|YP_001825806.1| | |
| S. sviceus ATCC 29083 | PAM | F, P(2) | gi|197933677|ref|ZP_03197971.1| |
| Putative acylase | P(2) | gi|197780832|ref|YP_002203628.1| | |
| Cyanobacteria | |||
| Cyanothece sp. PCC 7424 | Glutaryl-7-amino-cephalosporanic-acid acylase | F,P | gi|186900662|ref|ZP_02973619.1| |
| Peptidase S45, PAM | P(2) | gi|186902234|ref|ZP_02975180.1| | |
| Crocosphaera watsonii WH 8501 | AHL-acylase | P(2) | gi|67923096|ref|ZP_00516587.1| |
| F | gi|67923095|ref|ZP_00516586.1| | ||
| Chloroflexi | |||
| Chloroflexus aurantiacus J-10-fl | Peptidase S45, PAM | P | gi|163847876|ref|YP_001635920.1| |
| P | gi|163849271|ref|YP_001637315.1| | ||
| Herpetosiphon aurantiacus ATCC 23779 | peptidase S45, PAM | P | gi|159898624|ref|YP_001544871.1| |
| P | gi|159901506|ref|YP_001547753.1| | ||
| Bacteroidetes | |||
| Robiginitalea biformata HTCC2501 | PAM | P(2) | gi|88805528|ref|ZP_01121047.1| |
| P | gi|88804265|ref|ZP_01119785.1| | ||
| P(2) | gi|88804870|ref|ZP_01120390.1| | ||
aReference organism used was Ralstonia sp. XJ12B (Accession No. AAO41113.1) for searching Conserved Domains (CDs) of Ntn_hydrolase superfamily
bThis information has been retained in the Table to show variability in copy number in different species of a given Genus