Table 1.
Performance of the ContamFinder pipeline employing three different sequence similarity search tools compared to an all-vs-all blastx search
| Assembly type | Assembly size | all-vs-all blastx search (BLAST+) | ContamFinder (BLAST+) | ContamFinder (RAPsearch2) | ContamFinder (GHOSTX) | |
|---|---|---|---|---|---|---|
| Capra hircus (GAOJ01) | transcriptome | 25.1 Mb | 82 h 14 min 439 hits |
15 h 57 min 418 hits |
40 min 396 hits |
25 min 405 hits |
| Odocoileus virginianus (AEGY01) | genome | 14.3 Mb | 36 h 9 min 127 hits |
1 h 12 min 122 hits |
8 min 104 hits |
3 min 98 hits |