Table 2.
Numbers of parasite-derived contigs in publicly available genome and transcriptome assemblies
| Host species | WGS/TSA ID | Assembly type | # parasite-derived contigs | # sequences in dataset 1 | # sequences in dataset 2 |
|---|---|---|---|---|---|
| Helicoverpa assulta | GBTA01 | transcriptome | 8347 | 370 | 208 |
| Colinus virginianus | AWGU01 | genome | 4013 | 793 | 244 |
| Colinus virginianus a | AWGT01 | genome | 3098 | - | - |
| Ornithorhynchus anatinus c | AAPN01 | genome | 1397 (119) | 540 | 178 |
| Helicoverpa armigera | GBDM01 | transcriptome | 1137 | 160 | 102 |
| Teleopsis dalmanni | GBBP01 | transcriptome | 919 | 339 | 171 |
| Capra hircus | GAOJ01 | transcriptome | 405 | 107 | 63 |
| Annulipalpia sp. | GATX01 | transcriptome | 226 | 81 | 57 |
| Gorilla gorilla gorilla c | CABD02 (CABD03) | genome | 148 (3) | 33 | 15 |
| Camelus dromedarius | GADZ01 | transcriptome | 148 | 35 | 25 |
| Anolis carolinensis | GBBS01 | transcriptome | 120 | 54 | 33 |
| Anolis carolinensis a | GAFN01 | transcriptome | 119 | - | - |
| Dendroctonus frontalis b | GAFI01 | transcriptome | 114 | - | - |
| Dastarcus helophoroides | GBCX01 | transcriptome | 104 | 29 | 21 |
| Odocoileus virginianus | AEGY01 | genome | 98 | 34 | 11 |
| Odocoileus virginianus a | AEGZ01 | genome | 98 | - | - |
| Motis davidii | ALWT01 | genome | 66 | 9 | - |
| Anolis carolinensis a | GAFD01 | transcriptome | 62 | - | - |
| Orchesella cincta | GAMM01 | transcriptome | 61 | 30 | 27 |
| Ixodes ricinus b | GADI01 | transcriptome | 56 | - | - |
| Corydalinae sp. | GADH01 | transcriptome | 41 | 18 | - |
| Pseudomasaris vespoides | GAXQ01 | transcriptome | 39 | 18 | 17 |
| Camelus dromedarius a | GADZ01 | transcriptome | 24 | - | - |
| Ixodes scapularis | ABJB01 | genome | 26 | 7 | - |
| Homo sapiens | AADC01 | genome | 24 | 6 | - |
| Polyxenus lagurus | GBKF01 | transcriptome | 21 | 12 | - |
| Dendroctonus ponderosae | GAFW01 | transcriptome | 15 | 6 | - |
| Amblyomma americanum | GAGD01 | transcriptome | 10 | 4 | - |
| Carduelis chloris | GBCG01 | transcriptome | 8 | - | - |
| Capra hircus | GAOE01 | transcriptome | 8 | - | - |
| Ixodes ricinus | GANP01 | transcriptome | 7 | 5 | - |
| Camelus bactrianus | GAEY01 | transcriptome | 7 | 2 | |
| Dendroctonus ponderosae a | GAFX01 | transcriptome | 6 | - | - |
| Chrysochloris asiatica | AMDV01 | genome | 5 | 2 | - |
| Cuculus canorus | JNOX01 | genome | 5 | 2 | - |
| Bos mutus | AGSK01 | transcriptome | 5 | 1 | - |
| Nevrorthus apatelios | GACU01 | transcriptome | 4 | 3 | - |
| Fulmarus glacialis | JJRN01 | genome | 4 | 2 | - |
| Forficula auricula | GAAX01 | transcriptome | 4 | 3 | - |
| Serinus canaria | CAVT01 | genome | 3 | 2 | - |
| Capra hircus | GAFC01 | transcriptome | 3 | 2 | - |
| Balaenoptera bonaerensis | BAUQ01 | genome | 2 | 1 | - |
| Blattela germanica | GBID01 | transcriptome | 2 | - | - |
| Folsomia candida | GAMN01 | transcriptome | 2 | - | - |
| Carabus granulatus | GACW01 | transcriptome | 1 | - | - |
| Capra hircus | GAOG01 | transcriptome | 1 | - | - |
| Nemurella pictetii | GAAV01 | transcriptome | 1 | - | - |
| Anolis carolinensis | GADN01 | transcriptome | 1 | - | - |
| Phaedon cochleariae | GAPU01 | transcriptome | 1 | - | - |
| Gluvia dorsalis | GDAP01 | transcriptome | 1 | - | - |
| Rhipicephalus microplus | ADMZ02 | genome | 1 | - | - |
aAssembly was not used in phylogenetic analyses because it is based on the same raw data as another assembly
bAssembly was not used in phylogenetic analyses because it contains sequences from multiple parasite species
cData based on a superseded assembly version; the number of parasite-derived contigs in the current version is given in parentheses