Table 3.
Genetic effects of SNP markers associated with log2(day 5 antibody titers) at a 20% FDR threshold in the F2 intercross of Virginia Antibody lines
| Marker | Chromosomea | Positionb (bp) | Estimatec ± std. err. | P-valued | Sign.e |
|---|---|---|---|---|---|
| rs14799859 | GGA1 | 23,275,033 | 1.7 ± 0.5 | 0.0017 | 5% |
| rs15307852 | GGA1 | 69,259,824 | 1.5 ± 0.5 | 0.0019 | 5% |
| rs14207559 | GGA2 | 78,180,370 | 2.1 ± 0.4 | 3.6 × 10−6 | 5% |
| rs14242328 | GGA2 | 119,824,660 | 1.6 ± 0.4 | 0.0006 | 5% |
| rs14096690 | GGA16 | 192,620 | 1.2 ± 0.4 | 0.0050 | 20% |
a GGA Gallus gallus autosome
bNovember 2011 (galGal4) assembly
cAdditive genetic effect in model including all tabulated loci
dSignificance for additive genetic effect in model including all tabulated loci
eSignificance thresholds 5/20% FDR based on which markers were selected