Table 2. Microorganisms detected by bacteriological and mycological examination in samples from dead free-ranging roe deer examined at the Centre for Fish and Wildlife Health, Switzerland, 1958–2014.

		Associated with main disease	Total numbers detected
Bacteria
Gram (+)
	Actinomyces sp.	2	2
	Aerococcus viridans	1	1
	Bacillus sp.	1	1
	Clostridium sp.	3	3
	Clostridium perfringens	11	21
	Corynebacterium pseudotuberculosis	1	1
	Dermatophilus congolensis	3	3
	Enterococcus sp.	0	2
	Erysipelothrix rhusiopathiae	2	2
	Listeria sp.	1	1
	Staphylococcus sp.	17	27
	Staphylococcus aureus	6	27
	Streptococcus sp.	35	50
	Streptococcus bovis	0	1
	Streptococcus suis	0	1
	Trueperella pyogenenes	47	71
Gram (-)
	Actinobacillus sp.	2	3
	Aeromonas sp.	0	4
	Bordetella sp.	0	1
	Coliform bacteria	0	11
	Escherichia coli	31	95
	Fusobacterium sp.	1	1
	Fusobacterium necrophorum	6	6
	Hafnia alvei	1	1
	Klebsiella moblis	1	1
	Klebsiella pneumoniae	0	1
	Manheimia haemolytica	11	11
	Manheimia granulomatis	2	2
	Manheimia varginea	1	1
	Moraxella sp.	0	5
	Morganella morganii	1	1
	Mycoplasma sp.	0	1
	Neisseria sp.	2	2
	Pasteurella sp.	2	12
	Pasteurella multocida	14	20
	Pasteurella septica	0	2
	Salmonella enterica sp enterica	1	1
	Salmonella Typhimurium	1	1
	Yersina pseudotuberculosis	5	5
Acid-fast
	Mycobacterium avium subsp. paratuberculosis1	1	1
other
	Mixed bacterial flora	5	41
	Inconclusive or negative	54	361
Fungi
	Aspergillus sp.	20	20
	Aspergillus fumigatus	3	3
	Mucor sp.	4	4
	Mucor pussilis	1	1
	Not further specified	8	8

If not otherwise specified diagnosis is based on culture results.

¹PCR colon feces.