Supplementary Table 1.
The Primers Used in the Present study
Gene name | Accession no | Primer sequence | Size | Annealing temperature | |||
---|---|---|---|---|---|---|---|
Genotyping | |||||||
Gna11+ | F | GCCCCTTGTACAGATGGCAG | 820 bp | 60°C | |||
R | AGCATGCTGTAAGACCGTAG | ||||||
Gna11- | F | CAGGGGTAGGTGATGATTGTGC | 450 bp | 60°C | |||
R | GACTAGTGAGACGTGCTACTTCC | ||||||
Gnaq+ | F | AGCTTAGTCTGGTGACAGAAGC | 600 bp | 60°C | |||
Gnaqflox | R | GCATGCGTGTCCTTTATGTGAG | 700 bp | ||||
Cre recombinase | F | CAATTTACTGACCGTACAC | 1026 bp | 60°C | |||
R | TAATGCCATCTTCCAGCAG | ||||||
Reverse-transcription PCR | |||||||
Gnaq | NM_008139 | F | TGGACCGTGTAGCCGACCCT | 270 bp | 60°C | ||
R | GTGCTTTGCTCTCCTCCATGCGG | ||||||
Gna11 | NM_010301 | F | ACGAGGTGAAGGAGTCGAAGC | 573 bp | 60°C | ||
R | CCATCCTGAAGATGATGTTCTCC | ||||||
Actb | NM_007393 | F | TGAGAGGGAAATCGTGCGTG | 460 bp | 60°C | ||
R | GATCCACATCTGCTGGAAGGTG | ||||||
Real-time PCR | |||||||
1 | PKCα | NM_011101 | F | GCTTCCAGTGCCAAGTTTGC | 76 bp | 60°C | |
R | GCACCCGGACAAGAGAACGTAA | ||||||
2 | PKCδ | NM_011103 | F | TATCAACTGGTCCCTCCTGG | 105 bp | 60°C | |
R | CATTCAGGAACTCTGGGTCA | ||||||
3 | Lyz | NM_013590 | F | GGTCTACAATCGTTGTGAGTTGG | 387 bp | 65°C | |
R | CTCCGCAGTTCCGAATATACT | ||||||
4 | Defa1 | NM_010031 | F | TCAAGAGGCTGCAAAGGAAGAGAAC | 94 bp | 60°C | |
R | TGGTCTCCATGTTCAGCGACAGC | ||||||
5 | EphB3 | NM_010143 | F | CCATAGCCTATCGGAAGTTTACGT | 87 bp | 60°C | |
R | TCGCTCTCCGTAGCTCATGAC | ||||||
6 | EphB2 | NM_001290753 | F | CTCTACTGTAACGGGGACGG | 119 bp | 60°C | |
R | TTGAAGGTTCCTGATGGACA | ||||||
7 | Fzd5 | NM_001042659 | F | GTGCTTCATCTCCACGTCCA | 103 bp | 60°C | |
R | CAGGTAGCACGCAGACAAGA | ||||||
8 | Fzd7 | NM_008057 | F | ACCCTACTGCTCCCTACCTG | 84 bp | 60°C | |
R | AGAAGGGGAAAGACAAGCGG | ||||||
9 | Wnt5a | NM_009524 | F | ACAGGCATCAAGGAATGCCA | 104 bp | 60°C | +DMSO |
R | CGGCTGCCTATTTGCATCAC | ||||||
10 | Tcf4 | NM_013685 | F | AGCCCGTCCAGGAACTATG | 101 bp | 60°C | |
R | TGGAATTGACAAAAGGTGGA | ||||||
11 | Ascl2 | NM_008554 | F | TCCAGTTGGTTAGGGGGCTA | 107 bp | 60°C | |
R | GCATAGGCCCAGGTTTCTTG | ||||||
12 | Axin2 | NM_015732 | F | TGAGATCCACGGAAACAGC | 104 bp | 60°C | |
R | GTGGCTGGTGCAAAGACAT | ||||||
13 | Dll1 | NM_007865 | F | GGAGAAGATGTGCGACCCT | 103 bp | 60°C | |
R | CTCCCCTGGTTTGTCACAGT | ||||||
14 | Dll4 | NM_019454 | F | ATGGGGAGGTCTGTTTTGTG | 101 bp | 60°C | |
R | TATAACCCTTTGGCCCACTG | ||||||
15 | Notch1 | NM_008714 | F | CAAGAGGCTTGAGATGCTCC | 132 bp | 65°C | |
R | AAGGATTGGAGTCCTGGCAT | ||||||
16 | Hes1 | NM_008235 | F | CTGGTGCTGATAACAGCGGA | 80 bp | 60°C | |
R | AGGGCTACTTAGTGATCGGT | ||||||
17 | Hes5 | NM_010419 | F | CAAGGAGAAAAACCGACTGCG | 188 bp | 60°C | +DMSO |
R | CGAAGGCTTTGCTGTGTTTCA | ||||||
18 | Atoh1 | NM_007500 | F | GTGCGATCTCCGAGTGAGAG | 108 bp | 60°C | |
R | GGGATAAGCCCCGAACAACA | ||||||
19 | Lgr5 | NM_010195 | F | CAACCTCAGCGTCTTCACCT | 96 bp | 60°C | +DMSO |
R | TCTTCTAGGAAGCAGAGGCG | ||||||
20 | Bmi1 | NM_007552 | F | CTTTCATTGTCTTTTCCGCC | 90 bp | 60°C | |
R | TGGTTGTTCGATGCATTTCT | ||||||
21 | Spdef | NM_013891 | F | CACGTTGGATGAGCACTCGCTA | 142 bp | 60°C | |
R | AGCCACTTCTGCACGTTACCAG | ||||||
22 | Gfi1 | NM_010278 | F | GGCAAAAGATTCCACCAGAA | 110 bp | 60°C | |
R | TTGGAGCTCTGACTGAAGGC | ||||||
23 | Cdx1 | NM_009880 | F | GACGCCCTACGAATGGATGC | 80 bp | 60°C | |
R | ACTTGTCCTTGGTTCGGGTC | ||||||
24 | Cdx2 | NM_007673 | F | CCTACCCACGAACAGCATCTACT | 69 bp | 60°C | |
R | CCTGAGGTCCATAATTCCACTCA | ||||||
25 | Stk11 (Lkb1) | NM_001301853 | F | CTACTCCGAGGGATGTTGGA | 115 bp | 60°C | |
R | GATAGGTACGAGCGCCTCAG | ||||||
26 | Ihh | NM_010544 | F | GACTCATTGCCTCCCAGAACTG | 150 bp | 60°C | |
R | CCAGGTAGTAGGGTCACATTGC | ||||||
27 | Fgfr3 | NM_001163215 | F | TCGTGGCTGGAGCTACTTC | 95 bp | 60°C | |
R | CTCCTGCTGGCTAGGTTCAG | ||||||
28 | Actb | NM_007393 | F | CTTCCTCCCTGGAGAAGAGC | 101 bp | 60°C | |
R | AAGGAAGGCTGGAAAAGAGC |
DMSO, dimethyl sulfoxide; F, forward; Lgr5, leucine-rich repeat-containing G-protein-coupled receptor 5; R, reverse; Spdef, SAM pointed domain-containing Ets transcription factor.