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. 2017 Jan 20;7:2062. doi: 10.3389/fpls.2016.02062

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Copyright © 2017 Gacek, Bayer, Bartkowiak-Broda, Szala, Bocianowski, Edwards and Batley.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Manhattan and quantile-quantile plots resulting from GWAS for oleic and linoleic fatty acids. (A) Manhattan plot for oleic (C18:1) and linoleic (C18:2) fatty acid concentration. X-axis indicates SNP location along chromosomes depicted with different colors: A1–A10, C1–C9 and random chromosomes 20–32 (according to the B. napus Darmor v4.1 reference genome http://www.genoscope.cns.fr/brassicanapus/), y-axis is the log10(p) (P-value). Peak of significantly associated SNPs visible on chromosome A05. Genomic region surrounding a significant GWA peak for C18:1 and C18:2 FAs shown along the top with candidate genes known to be involved in lipid metabolism are listed in Table 3 and Supplementary Table 2. (B) Quantile-quantile (Q-Q) plot of P-values for oleic acid and linoleic fatty acid. The Y-axis is the observed negative base 10 logarithm of the P-values, and the X-axis is the expected observed negative base 10 logarithm of the P-values under the assumption that the P-values follow a uniform (0,1) distribution.