Table 1.
Classification and general features of UKL genomes according to MIGS specifications [63]
| MIGS ID | Property | Hyphomonadaceae UKL13-1 | Evidence codea | Betaproteobacterium UKL13-2 | Evidence code | Bacteroidetes UKL13-3 | Evidence codea |
|---|---|---|---|---|---|---|---|
| Classification | Domain Bacteria | TAS [64] | Domain Bacteria | TAS [64] | Domain Bacteria | TAS [64] | |
| Phylum Proteobacteria | TAS [65] | Phylum Proteobacteria | TAS [65] | Phylum Bacteroidetes | TAS [66] | ||
| Class Alphaproteobacteria | TAS [67] | Class Betaproteobacteria | TAS [68] | Class incertae sedis | NAS | ||
| Order Rhodobacterales | TAS [69] | Order incertae sedis | NAS | Order incertae sedis | NAS | ||
| Family Hyphomonadaceae | TAS [70] | Family incertae sedis | NAS | Family incertae sedis | NAS | ||
| Genus incertae sedis | NAS | Genus incertae sedis | NAS | Genus incertae sedis | NAS | ||
| Species incertae sedis | NAS | Species incertae sedis | NAS | Species incertae sedis | NAS | ||
| Strain UKL13-1 | NAS | Strain UKL13-2 | NAS | Strain UKL13-3 | NAS | ||
| Gram stain | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| Cell shape | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| Motility | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| Sporulation | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| Temperature range | 22-28 °C | NAS | 22-28 °C | NAS | 22-28 °C | NAS | |
| Optimum temperature | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| pH range; Optimum | 7.5-8.5; Unknown | NAS | 7.5-8.5; Unknown | NAS | 7.5-8.5; Unknown | NAS | |
| Carbon source | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| Terminal electron acceptor | Unknown | NAS | Unknown | NAS | Unknown | NAS | |
| MIGS-6 | Habitat | Freshwater lake | NAS | Freshwater lake | NAS | Freshwater lake | NAS |
| MIGS-6.3 | Salinity | 0.25% | NAS | 0.25% | NAS | 0.25% | NAS |
| MIGS-22 | Oxygen requirement | Aerobic | NAS | Aerobic | NAS | Aerobic | NAS |
| MIGS-15 | Biotic relationship | Syntrophic | TAS [71] | Syntrophic | TAS [71] | Syntrophic | TAS [71] |
| MIGS-14 | Pathogenicity | Unknown | NAS | Unknown | NAS | Unknown | NAS |
| MIGS-4 | Geographic location | Upper Klamath Lake, Oregon, USA | NAS | Upper Klamath Lake, Oregon, USA | NAS | Upper Klamath Lake, Oregon, USA | NAS |
| MIGS-5 | Sample collection | Aug 6, 2013 | NAS | Aug 6, 2013 | NAS | Aug 6, 2013 | NAS |
| MIGS-4.1 | Latitude | 42°22' N | NAS | 42°22' N | NAS | 42°22' N | NAS |
| MIGS-4.2 | Longitude | -121°55' W | NAS | -121°55' W | NAS | -121°55' W | NAS |
| MIGS-4.4 | Altitude | 1,260 m | NAS | 1,260 m | NAS | 1,260 m | NAS |
aEvidence Codes IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are derived from the Gene Ontology project