Table 6.
Properties and statistics for each genome
| Attribute | Hyphomonadaceae UKL13-1 | Betaproteobacterium UKL13-2 | Bacteroidetes UKL13-3 | |||
|---|---|---|---|---|---|---|
| Value | % of total | Value | % of total | Value | % of total | |
| Genome size (bp) | 3,501,508 | 100 | 3,387,087 | 100 | 3,236,529 | 100 |
| DNA coding (bp) | 3,166,294 | 90.43 | 3,017,556 | 89.09 | 2,922,707 | 90.3 |
| DNA G + C (bp) | 1,964,937 | 56.12 | 1,862,116 | 54.98 | 1,208,228 | 37.33 |
| DNA scaffolds | 1 | 1 | 1 | |||
| Total genes | 3255 | 100 | 3087 | 100 | 2850 | 100 |
| Protein coding genes | 2934 | 90.14 | 2772 | 89.8 | 2598 | 91.16 |
| RNA genes | 44 | 1.35 | 50 | 1.62 | 41 | 1.44 |
| Pseudo genes | 277 | 8.51 | 265 | 8.58 | 211 | 7.4 |
| Genes in internal clusters | - | - | - | - | - | - |
| Genes with function prediction | 2459 | 75.55 | 2300 | 74.51 | 1872 | 65.68 |
| Genes assigned to COGs | 2156 | 66.24 | 2078 | 67.31 | 1696 | 59.51 |
| Genes with Pfam domains | 2697 | 82.86 | 2489 | 80.63 | 2066 | 72.49 |
| Genes with signal peptides | 382 | 11.74 | 235 | 7.61 | 301 | 10.56 |
| Genes with transmembrane helices (≥3) | 310 | 9.52 | 271 | 8.78 | 255 | 8.95 |
| CRISPR repeats | 0 | 2 | 1 | |||