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. 2004 Nov;186(22):7680–7689. doi: 10.1128/JB.186.22.7680-7689.2004

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Copyright © 2004, American Society for Microbiology

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FIG. 7. — Condensed phylogenetic tree of the archaeal AlaDH-OCD-μ-crystallin family. The values at the internodes are bootstrap values. The Roman numerals indicate the 10 subfamilies. The letter coding behind each genus name indicates the gene locus or protein, where available. In some cases the beginning of the accession number was used to differentiate paralogues. The organisms, in alphabetical order with the accession numbers in parentheses, are Aeropyrum pernix APE0916 (Q9YDJ7), A. tumefaciens AGR_L_247 (AAK88692), A. tumefaciens AAF (AAF77139), A. tumefaciens AAL44 (AAL44751), A. tumefaciens AAL45 (AAL45552), A. tumefaciens AAL46 (AAL46252), A. tumefaciens Q44 (Q44332), A. tumefaciens Q9W (Q9WWA2), A. tumefaciens AGR_L_1807 (AAK89477), A. tumefaciens AGR_PTI_54 (AAK90974), A. tumefaciens AGRT4 (Q59701), A. tumefaciens AGRT5 (P09773), A. tumefaciens TIORF188 (Q9R693), A. tumefaciens TORF21 (Q9R468), Arabidopsis thaliana (Q9FLY0), A. fulgidus AlaDH AF1665 (O28608), Brucella abortus (Q59175), Brucella melitensis BMEII0397 (Q8YCY1), Corynebacterium glutamicum (Q9Z468), Drosophila melanogaster CG4872 (AAL68180), Halobacterium sp. strain NRC-1 OCD1 (Q9HN71), Halobacterium sp. strain NRC-1 OCD2 (Q9HQ24), Homo sapiens Mu (AAH18061), H. sapiens THBP (Q14894), Macropus fuliginosus Mu (Q28488), Mesorhizobium loti MLL6776 (Q988E2), M. loti MLR1729 (Q98JY2), M. loti MLR2282 (Q98IR6R), M. loti MLR3204 (Q98GR8), M. loti MLR7139 (Q987A2), Methanothermobacter thermautotrophicum MTH1495 (027539), Mus musculus Mu (O54983), Pseudomonas aeruginosa PA4908 (Q9HUQ5), P. aerophilum PAE2445 (Q8ZV60), Ralstonia solanacearum RSP0418 (Q8XSP9), R. solanacearum RSP0483 (Q8XSJ1), Rattus norvegicus Mu (Q9QYU4), Rhizobium meliloti P33 (P33728), R. meliloti Q92 (Q92U20), R. meliloti OCD1 (P58338), R. meliloti OCD2 (P58339), R. meliloti RA0256 (Q930E2), Rhizobium sp. strain NGR234 Y4TK (P55665), R. capsulatus (O68052), Schizosaccharomyces pombe SPAP11E10.01 (Q9HDZ0), Staphylococcus aureus SA0113 (Q99X98), Streptomyces avermitilis (Q93H28), S. hygroscopicus var. ascomyceticus FKBL (Q9KIE2), S. hygroscopicus RAPL lysine cyclodeaminase (Q54304), Sulfolobus solfataricus SSO0378 (Q980D6), S. solfataricus SSO3243 (Q97TY8), S. tokodaii ST2179 (Q96YJ3), S. tokodaii ST2334 (Q96Y33), Thermoplasma acidophilum TA0480 (Q9HKW3), T. volcanium TVG0859714 (Q97AH2), and Yersinia pestis YPO4090 (Q8Z9V2).