TABLE 2.
Topology predictions for FlhA by topological prediction algorithms
| TM | Residues in FlhA primary sequence predicted to constitute the TM
|
|||||||
|---|---|---|---|---|---|---|---|---|
| SwissProt | DAS | HMMTOP | PHDtm | SOSUI | TMHMM | TMpred | TopPred2 | |
| TM1 | 24-44 | 23-63 | 22-41 | 26-50 | 19-41 | 21-43 | 21-44 | 24-44 |
| TM2 | 46-66 | 46-66 | 46-64 | 44-66 | 47-64 | 46-65 | ||
| TM3 | 71-91 | 75-86 | 73-97 | 72-89 | 72-94 | 76-98 | 68-93 | 68-88 |
| TM4 | 95-115 | |||||||
| TM5 | 121-141 | 123-140 | 118-142 | 120-139 | 122-144 | 118-140 | 123-140 | 122-142 |
| TM6 | 209-229 | 211-228 | 210-229 | 210-227 | 208-230 | 213-235 | 209-229 | 209-229 |
| TM7 | 247-267 | 258-264 | 250-269 | 250-267 | 248-270 | 250-272 | 244-266 | 250-270 |
| TM8 | 296-316 | 293-304 | 292-316 | 296-320 | 298-320 | 293-315 | 310-327 | 307-327 |