TABLE 2.

Consensus sequences upstream of the genes upregulated by blue light

Cluster and gene	Description	Coordinatea
Cluster 3	TGATC(N17)CGTAb
G2RS3857-RS3858	Intergenic region	−110
RSP0601	σ38, rpoH2	−66
RSP1091 (RSP1087 to RSP1090)c	Flavin containing amine oxidoreductase	−54
RSP1092 (RSP1093)	σE, rpoE	−130
RSP1852d	Putative UV-endonuclease	−103
RSP2143 (RSP2144)	DNA photolyase, phrA	−49
Cluster 4	TTG(N18)CTAe
MRS0794-RS0795	Intergenic region	−34
RSP0351	Putative oxidoreductase	−133 and −53
RSP0392	Putative lactoylglutathione lyase	−56
RSP0557	Hypothetical protein	−86
RSP1025 (RSP1026)	Conserved hypothetical protein	−63
RSP1204	ABC-type transport system, ATPase component	−52
RSP1760	Conserved hypothetical protein	−149
RSP1887	Ribosomal protein L33	−85 and −40
RSP1895	Putative transport protein	−35
RSP1985	Hypothetical protein	−56
RSP2314	Oxidoreductase of aldo/keto reductase family	−57
RSP2389 (RSP2390)	Putative glutathione peroxidase	−102
RSP2624	Hypothetical protein	−40
RSP3075 (RSP3076)	Conserved hypothetical protein	−54
RSP3164 (RSP3162 to RSP3163)	Putative oxidoreductase/aldehyde dehydrogenase subunit	−54
RSP3272	Gamma-glutamyltranspeptidase	−47
RSP3274 (RSP3273)	ABC multidrug/carbohydrate transporter, ATPase subunit	−91
RSP3537	Alcohol dehydrogenase, zinc containing	−52
RSP3866	Hypothetical protein	−111
RSP4209	Putative acyltransferase	−107

^aThat is, the coordinate(s) of the 5′-end nucleotide(s) of the consensus sequence upstream of the first translated nucleotide (+1).

^bThere were no mismatches in the conserved nucleotides.

^cGenes in parentheses are proposed (based on gene arrangement) to be cotranscribed with the gene containing the consensus sequence.

^dThis gene also has the putative consensus of σ³⁸ promoter located at −63.

^eNo more than one mismatch in the conserved nucleotides.