TABLE 1.
Oligonucleotides and RNAs used in this study
Oligonucleotide or RNA | Orientation | Use | Sequence |
---|---|---|---|
DNA oligonucleotides | |||
D23.3 | 5′ | PCR-SARS-CoV | 5′ CATATGAGTTTAGAAAATGTGGC 3′ |
D29.2 | 3′ | RT-PCR, SARS-CoV | 5′ GGATCCTTATTGTAGTTTTGGGTAGAAGG 3′ |
D27.2 | 5′ | PCR, IBV | 5′ ACATATGTCTATCGACAATATTGCTTA 3′ |
D27.3 | 3′ | RT-PCR, IBV | 5′ ACTCGAGTTGAAGCTGTGGATAACATG 3′ |
D27.4 | 5′ | PCR, MHV | 5′ ACATATGAGTTTAGAAAATGTAGTGTA 3′ |
D27.5 | 3′ | RT-PCR, MHV | 5′ ACTCGAGCTGCAAACGAGGATAGAAAG 3′ |
Chemically synthesized RNAs | |||
R10.2 | Nsp15 substrate | 5′ UGGGAGUAUA 3′ | |
R12 | Nsp15 substrate | 5′ CCCCCGCCCCCC 3′ | |
SK21 | Nsp15 substrate | 5′ GACGCUGAAUUAGGACAUAGA 3′ | |
LE19P | Nsp15 substrate | 5′ UGUUAUAAUUAUUGUAUAC-puromycin 3′ | |
F16.2 | Nsp15 substrate | 5′ fluorescein-GGUCAGGAUACCUGGC 3′ | |
LE21 | Nsp15 substrate | 5′ UGUUAUAAUUAUUGUAUAUAC 3′ | |
T7 RNA polymerase transcript SL13 | Nsp15 substrate | 5′ GGUGCAUAGCACC 3′ | |
Double-stranded RNA ds34 | Nsp15 substrate | 5′ UGUUAUAAUUAUUGUAUAUACAAUAAUUAUAACU 3′ | |
3′ ACAAUAUUAAUAACAUAUAUGUUAUUAAUAUUGA 5′ |