Table 1.
Number | Gene name | Clinical relevance validation (P value of overall survival analysis) | Reference | |
---|---|---|---|---|
ccRCC cohort | HCC cohort | |||
1 | ADAM9 | NS | 0.001 | [10] |
2 | ADORA2B | 0.006 | NS | [11] |
3 | AGR2 | <0.001 | NS | [12] |
4 | AKT1 | NS | NS | [13] |
5 | ANXA1 | NS | NS | [14] |
6 | APOBEC3G | 0.045 | NS | [15] |
7 | ATF4 | 0.001 | 0.031 | [16] |
8 | AXL | 0.005 | NS | [17] |
9 | BACH1 | NS | NS | [18] |
10 | BCL2L1 | NS | NS | [19] |
11 | BCL3 | <0.001 | NS | [20] |
12 | BIRC5 | <0.001 | <0.001 | [21] |
13 | BSG | NS | 0.004 | [22] |
14 | C5AR1 | NS | NS | [23] |
15 | CAV1 | NS | NS | [24] |
16 | CCL2 | NS | NS | [25] |
17 | CCR7 | NS | 0.002 | [26] |
18 | CD24 | NS | NS | [27] |
19 | CD44 | 0.016 | NS | [28] |
20 | CDCP1 | NS | NS | [29] |
21 | CEACAM6 | 0.004 | NS | [30] |
22 | CEBPD | 0.022 | NS | [31] |
23 | CENPF | <0.001 | 0.008 | [32] |
24 | CHD1L | <0.001 | 0.007 | [33] |
25 | CHI3L1 | NS | NS | [34] |
26 | CLDN9 | 0.039 | NS | [35] |
27 | COL6A1 | <0.001 | NS | [36] |
28 | COMP | 0.040 | NS | [37] |
29 | CSNK2A2 | NS | NS | [38] |
30 | CTSB | NS | NS | [38] |
31 | CTSZ | <0.001 | NS | [39] |
32 | CXCL1 | <0.001 | 0.001 | [40] |
33 | CXCL10 | NS | NS | [41] |
34 | CXCL8 | 0.002 | <0.001 | [42] |
35 | CXCR4 | NS | NS | [43] |
36 | E2F1 | 0.001 | 0.005 | [44] |
37 | EIF5A | <0.001 | NS | [45] |
38 | ELF5 | NS | NS | [46] |
39 | ENAH | NS | 0.012 | [47] |
40 | ENPP2 | NS | NS | [48] |
41 | ETV4 | 0.003 | 0.001 | [49] |
42 | EZH2 | <0.001 | <0.001 | [50] |
43 | FGFR1 | NS | NS | [51] |
44 | FLOT2 | NS | NS | [52] |
45 | FOSL1 | <0.001 | NS | [53] |
46 | FOXC1 | NS | NS | [54] |
47 | FOXM1 | <0.001 | 0.009 | [55] |
48 | FOXQ1 | NS | NS | [56] |
49 | FZD2 | <0.001 | NS | [57] |
50 | GABRA3 | NS | 0.004 | [58] |
51 | GDF15 | NS | NS | [59] |
52 | GHRL | <0.001 | NS | [60] |
53 | GLI2 | <0.001 | NS | [61] |
54 | GOLM1 | NS | 0.049 | [62] |
55 | GRK3 | NS | NS | [63] |
56 | HMGB1 | NS | NS | [64] |
57 | HMMR | 0.003 | <0.001 | [65] |
58 | HOXB13 | <0.001 | NS | [66] |
59 | HOXB7 | NS | NS | [67] |
60 | HOXB9 | <0.001 | NS | [68] |
61 | ID1 | NS | NS | [69] |
62 | IDO1 | NS | NS | [70] |
63 | IGFBP2 | NS | NS | [71] |
64 | IL32 | NS | NS | [72] |
65 | IL5 | NS | NS | [73] |
66 | IL6 | <0.001 | NS | [74] |
67 | IP6K2 | 0.001 | NS | [75] |
68 | ITGA3 | NS | NS | [76] |
69 | ITGA5 | 0.018 | 0.011 | [77] |
70 | ITGBL1 | NS | NS | [78] |
71 | KISS1R | NS | NS | [79] |
72 | KLF8 | NS | NS | [80] |
73 | L1CAM | 0.007 | NS | [81] |
74 | LAMB3 | 0.001 | NS | [67] |
75 | LEF1 | 0.007 | NS | [82] |
76 | LGALS1 | <0.001 | 0.048 | [83] |
77 | LGALS3 | NS | NS | [84] |
78 | LOX | NS | 0.047 | [85] |
79 | LOXL2 | 0.033 | NS | [86] |
80 | MBD4 | NS | NS | [87] |
81 | MCAM | NS | NS | [88] |
82 | MET | NS | NS | [89] |
83 | MMP1 | 0.030 | 0.002 | [90] |
84 | MMP16 | NS | NS | [91] |
85 | MMP9 | 0.001 | 0.009 | [92] |
86 | MTA1 | 0.015 | NS | [93] |
87 | MTA2 | 0.001 | NS | [94] |
88 | MYB | 0.031 | 0.021 | [95] |
89 | NFATC2 | NS | NS | [96] |
90 | NRP2 | NS | NS | [97] |
91 | NTRK3 | NS | 0.044 | [98] |
92 | PARP1 | NS | NS | [99] |
93 | PCDH7 | NS | NS | [100] |
94 | PDGFRB | NS | NS | [101] |
95 | PDPN | 0.034 | NS | [102] |
96 | PELP1 | 0.011 | NS | [103] |
97 | PHGDH | NS | NS | [104] |
98 | PHIP | NS | NS | [105] |
99 | PLAUR | <0.001 | NS | [35] |
100 | PLOD2 | 0.004 | 0.008 | [106] |
101 | POSTN | NS | NS | [107] |
102 | PPIA | 0.015 | 0.038 | [108] |
103 | PRRX1 | 0.045 | NS | [109] |
104 | PRSS50 | <0.001 | NS | [89] |
105 | PTGS2 | 0.040 | NS | [110] |
106 | PTTG1 | <0.001 | 0.004 | [111] |
107 | PXN | 0.001 | NS | [112] |
108 | RAB22A | 0.024 | NS | [113] |
109 | RAC1 | NS | NS | [97] |
110 | RAF1 | 0.025 | NS | [23] |
111 | RHOC | 0.030 | NS | [114] |
112 | ROR2 | 0.001 | NS | [115] |
113 | RRAS | <0.001 | NS | [116] |
114 | RUNX3 | NS | 0.032 | [117] |
115 | S100A4 | NS | NS | [118] |
116 | S100P | NS | NS | [119] |
117 | SEMA3E | <0.001 | NS | [120] |
118 | SFRP2 | 0.020 | NS | [121] |
119 | SIX2 | 0.001 | 0.036 | [122] |
120 | SNAI1 | 0.045 | NS | [123] |
121 | SNAI2 | NS | NS | [124] |
122 | SOX12 | <0.001 | 0.045 | [125] |
123 | SOX4 | NS | 0.018 | [126] |
124 | SPINK1 | <0.001 | NS | [127] |
125 | SPON2 | <0.001 | NS | [128] |
126 | SPP1 | NS | 0.000 | [129] |
127 | SRC | <0.001 | 0.037 | [130] |
128 | SRGN | NS | NS | [131] |
129 | SRPK1 | NS | NS | [132] |
130 | TACSTD2 | NS | NS | [133] |
131 | TDO2 | 0.020 | NS | [134] |
132 | TF | <0.001 | NS | [135] |
133 | TGFB1 | 0.008 | NS | [73] |
134 | TGM2 | 0.003 | NS | [136] |
135 | TNC | NS | NS | [137] |
136 | TNFSF10 | NS | NS | [138] |
137 | TNK2 | 0.016 | NS | [139] |
138 | TP73 | 0.016 | NS | [140] |
139 | TPO | 0.043 | NS | [141] |
140 | TRIM28 | NS | 0.00 | [142] |
141 | TWIST1 | 0.002 | NS | [143] |
142 | UBE2 N | NS | NS | [144] |
143 | VAV1 | 0.038 | NS | [145] |
144 | VEGFB | NS | NS | [146] |
145 | VIM | 0.014 | NS | [147] |
146 | WASF3 | NS | NS | [148] |
147 | WNT5A | 0.008 | NS | [149] |
148 | WSB1 | <0.001 | NS | [150] |
149 | YBX1 | 0.038 | <0.001 | [151] |
150 | ZEB2 | NS | NS | [152] |
NS not significant