TABLE 2.
CVs of virus assays describeda
PCR target | Quantity | Intra-assay variation
|
Interassay variation (CV2) | |
---|---|---|---|---|
CV1a | CV1b | |||
CMV | 1.00E+05 | 0.22 | 0.21 | 2.41 |
1.00E+04 | 0.94 | 1.09 | 2.12 | |
1.00E+03 | 0.57 | 0.47 | 1.90 | |
1.00E+02 | 0.80 | 0.26 | 1.56 | |
1.00E+01 | 0.38 | 2.12 | 1.99 | |
EBV | 1.00E+06 | 0.30 | 0.63 | 2.96 |
1.00E+05 | 1.15 | 0.80 | 2.80 | |
1.00E+04 | 0.32 | 0.28 | 1.90 | |
1.00E+03 | 0.24 | 0.17 | 1.83 | |
HHV-6 | 1.00E+06 | 0.27 | 0.39 | 1.42 |
1.00E+05 | 0.26 | 0.52 | 1.63 | |
1.00E+04 | 0.51 | 0.50 | 1.00 | |
1.00E+03 | 0.08 | 0.63 | 0.84 | |
1.00E+02 | 0.25 | 1.56 | 1.60 | |
HHV-7 | 1.00E+05 | 0.85 | 0.41 | 2.45 |
1.00E+04 | 0.11 | 0.26 | 1.89 | |
1.00E+03 | 0.45 | 0.21 | 1.69 | |
1.00E+02 | 0.50 | 0.26 | 1.73 | |
1.00E+01 | 0.20 | 0.28 | 1.24 | |
HHV-8 | 1.00E+06 | 0.52 | 0.46 | 1.07 |
1.00E+05 | 0.29 | 0.44 | 0.77 | |
1.00E+04 | 0.53 | 0.11 | 0.82 | |
1.00E+03 | 0.68 | 0.58 | 0.81 | |
1.00E+02 | 0.23 | 0.20 | 0.67 | |
HSV-1b | 1.00E+05 | 0.38 | 0.10 | 2.60 |
1.00E+04 | 0.30 | 0.20 | 1.99 | |
1.00E+03 | 0.20 | 0.19 | 1.79 | |
1.00E+02 | 0.51 | 0.22 | 1.61 | |
HSV-2 | 1.00E+05 | 2.42 | 0.62 | 2.05 |
1.00E+04 | 0.37 | 0.12 | 1.80 | |
1.00E+03 | 0.87 | 0.36 | 1.73 | |
1.00E+02 | 0.33 | 0.36 | 1.43 | |
VZV | 1.00E+05 | 0.64 | 0.46 | 3.67 |
1.00E+04 | 0.17 | 0.20 | 3.09 | |
1.00E+03 | 0.39 | 0.38 | 3.17 | |
1.00E+02 | 0.29 | 0.13 | 2.69 | |
1.00E+01 | 2.94 | 1.15 | 3.91 | |
AdV A | 1.00E+06 | 0.32 | 0.62 | 1.16 |
1.00E+05 | 0.18 | 0.24 | 1.08 | |
1.00E+04 | 0.18 | 0.37 | 0.85 | |
1.00E+03 | 0.40 | 0.17 | 0.84 | |
AdV B | 1.00E+05 | 0.32 | 0.07 | 1.92 |
1.00E+04 | 0.34 | 0.06 | 1.79 | |
1.00E+03 | 0.39 | 0.26 | 1.73 | |
1.00E+02 | 0.23 | 0.17 | 1.27 | |
AdV C | 1.00E+05 | 0.50 | 0.51 | 0.56 |
1.00E+04 | 0.40 | 0.31 | 0.75 | |
1.00E+03 | 0.07 | 0.15 | 0.45 | |
1.00E+02 | 0.21 | 0.22 | 0.43 | |
1.00E+01 | 0.75 | 0.81 | 0.73 | |
AdV D | 1.00E+05 | 0.53 | 0.68 | 1.79 |
1.00E+04 | 0.09 | 0.45 | 1.92 | |
1.00E+03 | 0.37 | 0.15 | 1.49 | |
1.00E+02 | 0.42 | 0.11 | 1.08 | |
AdV E | 1.00E+05 | 0.18 | 0.57 | 1.17 |
1.00E+04 | 0.17 | 0.15 | 0.78 | |
1.00E+03 | 0.63 | 0.43 | 0.74 | |
1.00E+02 | 0.32 | 0.33 | 0.50 | |
1.00E+01 | 0.45 | 0.58 | 1.34 | |
AdV F | 1.00E+06 | 0.13 | 0.30 | 0.87 |
1.00E+05 | 0.19 | 0.32 | 1.17 | |
1.00E+04 | 0.22 | 0.15 | 1.02 | |
1.00E+03 | 0.13 | 0.27 | 0.82 | |
BKV | 3.00E+06 | 0.31 | 0.21 | 1.02 |
3.00E+05 | 0.36 | 0.46 | 1.08 | |
3.00E+04 | 0.22 | 0.27 | 0.86 | |
3.00E+03 | 0.33 | 0.39 | 0.96 | |
3.00E+02 | 0.25 | 0.16 | 0.79 | |
JCV | 1.60E+05 | 0.21 | 0.18 | 0.53 |
1.60E+04 | 0.53 | 0.30 | 0.56 | |
1.60E+03 | 0.33 | 0.27 | 0.52 | |
1.60E+02 | 0.30 | 0.24 | 0.35 | |
1.60E+01 | 0.61 | 1.15 | 0.83 | |
PVB19 | 1.00E+06 | 0.56 | 0.57 | 2.33 |
1.00E+05 | 0.35 | 0.37 | 2.49 | |
1.00E+04 | 0.38 | 0.25 | 2.41 | |
1.00E+03 | 0.43 | 0.37 | 2.07 | |
Enterovirus | 1.00E+07 | 0.24 | 0.45 | 1.58 |
1.00E+06 | 0.43 | 0.44 | 1.31 | |
1.00E+05 | 0.63 | 0.40 | 1.18 | |
1.00E+04 | 0.62 | 0.42 | 1.08 | |
1.00E+03 | 1.75 | 2.57 | 2.39 | |
RSVc | 1.00E+05 | 0.67 | 0.39 | 3.20 |
1.00E+04 | 0.55 | 0.21 | 2.06 | |
1.00E+03 | 0.39 | 0.40 | 1.66 | |
1.00E+02 | 0.58 | 0.59 | 2.43 | |
Influenza A virus | 1.00E+06 | 0.34 | 0.25 | 2.52 |
1.00E+05 | 0.34 | 0.20 | 1.99 | |
1.00E+04 | 0.83 | 0.50 | 1.78 | |
1.00E+03 | 0.60 | 0.22 | 1.31 | |
Influenza B virus | 1.00E+04 | 0.70 | 0.73 | 2.78 |
1.00E+03 | 0.30 | 0.31 | 2.36 | |
1.00E+02 | 0.39 | 0.40 | 2.10 | |
1.00E+01 | 1.12 | 1.16 | 2.13 | |
PIV-1d | 1.00E+05 | 0.88 | 0.26 | 1.50 |
1.00E+04 | 0.18 | 0.19 | 1.46 | |
1.00E+03 | 0.43 | 0.09 | 1.30 | |
1.00E+02 | 0.34 | 0.21 | 1.20 | |
1.00E+01 | 0.52 | 0.32 | 1.03 | |
PIV-2 | 1.00E+05 | 0.06 | 0.24 | 1.84 |
1.00E+04 | 0.41 | 0.19 | 1.22 | |
1.00E+03 | 0.17 | 0.29 | 1.33 | |
1.00E+02 | 0.18 | 0.19 | 1.20 | |
1.00E+01 | 0.73 | 0.94 | 1.25 | |
PIV-3 | 1.00E+04 | 0.32 | 0.26 | 0.57 |
1.00E+03 | 0.82 | 0.57 | 0.72 | |
1.00E+02 | 0.55 | 0.50 | 0.59 | |
1.00E+01 | 0.44 | 1.56 | 1.29 |
CVs observed in RQ-PCR analyses of different virus quantities are presented. The intra-assay variation was calculated by comparing the Ct values of two simultaneously amplified triplicate reactions (CV1a versus CV1b). The interassay variation was assessed by comparing triplicate reactions of different RQ PCR runs (CV2). The mean values for intra-and interassay variation across all virus assays are as follows: CV1a, 0.46; CV1b, 0.43; CV2, 1.55.
HSV-1, herpes simplex virus type 1.
RSV, respiratory syncytial virus.
PIV-1, parainfluenza virus type 1.