Table 2.
Results of PAML branch-site model analysis of 16 taxa trees with infinite fitness change
| d | θ | |||
|---|---|---|---|---|
| 0.01 | 0.05 | 0.1 | 20 | |
| 0.01 | – | – | (87/87/ 0.4) | (100/100/0.4) |
| 0.1 | – | – | – | (57/57/2.8) |
| 0.2 | – | – | – | (7/7/0.3) |
| 0.5 | – | – | – | – |
| 1.0 | – | – | – | – |
100 identical data sets were created for each set of parameter values. Data sets where PAML could not detect the presence of positive selection with the LRT are shown by a “–”. The percentage of data sets where positive selection was identified, the percentage of sites undergoing positive selection that were identified, as well as the percentage of other sites that were misidentified, is shown where there are data sets for which the LRT indicated positive selection