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. 2016 Sep 25;33(2):256–265. doi: 10.1093/bioinformatics/btw616

Table 2.

Top 25 over-represented Gene Ontology biological process terms of the top 50 LA scouting ego genes (W genes), after manual removal of overly broad and overlapping terms

GOBPID P-value Count Size Term
GO:0002768 5.59E−09 13 261 Immune response-regulating cell surface receptor Signaling pathway
GO:0045321 7.87E−09 16 447 Leukocyte activation
GO:0032386 1.76E−08 13 287 Regulation of intracellular transport
GO:0038093 2.17E−08 11 190 Fc receptor signaling pathway
GO:0032880 3.79E−08 14 366 Regulation of protein localization
GO:0002252 1.44E−07 14 407 Immune effector process
GO:0050776 1.51E−07 16 551 Regulation of immune response
GO:0002764 2.32E−07 13 357 Immune response-regulating signaling pathway
GO:0071495 4.44E−07 17 677 Cellular response to endogenous stimulus
GO:0006913 1.24E−06 11 283 Nucleocytoplasmic transport
GO:0031295 1.32E−06 6 56 T cell costimulation
GO:0048546 1.34E−06 5 31 Digestive tract morphogenesis
GO:0071822 1.42E−06 19 917 Protein complex subunit organization
GO:0044744 1.47E−06 9 177 Protein targeting to nucleus
GO:0043066 1.94E−06 14 504 Negative regulation of apoptotic process
GO:0000904 3.37E−06 14 528 Cell morphogenesis involved in differentiation
GO:0010647 4.41E−06 17 797 Positive regulation of cell communication
GO:0048699 5.23E−06 17 807 Generation of neurons
GO:0071214 5.42E−06 8 155 Cellular response to abiotic stimulus
GO:0009719 5.74E−06 18 907 Response to endogenous stimulus
GO:0042060 7.21E−06 13 484 Wound healing
GO:0042177 8.06E−06 5 44 Negative regulation of protein catabolic process
GO:0042325 9.17E−06 17 841 Regulation of phosphorylation
GO:0048565 9.36E−06 6 78 Digestive tract development
GO:0071363 1.01E−05 13 499 Cellular response to growth factor stimulus