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. 2017 Jan 4;114(3):E317–E326. doi: 10.1073/pnas.1614684114

Table S1.

Reactions and typical parameter values used in a reduced model comprising DUSP5, ERK, and an upstream kinase (K) without cellular compartmentalization

No. Reaction Rate Value
1 ERK activation kact kact=0.5
ERK+K*ERK*+K*
2 DUSP synthesis kD kD=0.5,τ=3
ERK*ERK*+DUSP(delay:τ)
3 Sequestration ksq ksq=1
ERK*+DUSPERK:DUSP
4 Release γERK:DUSP γERK:DUSP=1
ERK:DUSPERK
5 Upstream input eγit γi=1
KK*
6 Upstream negative feedback γK+kfb[ERK*]nθn+[ERK*]n γK=1,kfb=1,
K*K θ=0.5,n=4
7 ERK deactivation γERK γERK=0.1
ERK*ERK
8 DUSP degradation γDUSP γDUSP=0.5
DUSP