Table 3.
Average probability values of each dot blot hybridization result being a positive signal*.
| DNA marker | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Taxonomic | Nisin operon | Virulence related | Antibiotic resistance | Dot blot pattern | ||||||||||||
| Strain | U1 | U2 | A1 | A2 | NU1 | NU3 | V1 | V2 | V3 | V4 | V6 | V7 | R1 | R2 | R3 | |
| (nsuR) | (nsuI) | (hasC) | (gapC) | (oppF) | (sua) | (pauA) | (hasA) | (ermB) | (linB) | (tetS) | ||||||
| SU57 | 1.00 | 1.00 | 0.00 | 0.00 | 0.02 | 0.08 | 0.95 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.05 | 0.01 | 0.01 | A |
| SU91 | 0.99 | 1.00 | 0.00 | 0.00 | 0.21 | 0.05 | 0.99 | 0.99 | 0.98 | 0.98 | 1.00 | 1.00 | 0.05 | 0.04 | 0.02 | A |
| SU114 | 0.95 | 1.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.89 | 0.99 | 0.98 | 0.96 | 1.00 | 1.00 | 0.09 | 0.02 | 0.02 | A |
| SU16 | 1.00 | 1.00 | 0.00 | 0.00 | 0.03 | 0.14 | 0.92 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 0.04 | 0.03 | 0.06 | A |
| SU112 | 0.96 | 1.00 | 0.00 | 0.00 | 0.11 | 0.04 | 0.95 | 0.98 | 0.96 | 0.98 | 1.00 | 0.00 | 0.17 | 1.00 | 0.10 | B |
| SU52 | 0.98 | 1.00 | 0.01 | 0.00 | 0.92 | 1.00 | 0.85 | 1.00 | 0.97 | 0.95 | 0.98 | 0.00 | 1.00 | 0.01 | 0.00 | C |
| SU53 | 0.99 | 1.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.92 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 0.02 | 0.01 | C |
| SU58 | 0.93 | 1.00 | 0.00 | 0.00 | 0.94 | 0.98 | 0.98 | 1.00 | 1.00 | 0.99 | 0.99 | 0.00 | 1.00 | 0.01 | 0.06 | C |
| SU59 | 0.95 | 1.00 | 0.00 | 0.00 | 1.00 | 0.96 | 0.98 | 1.00 | 0.99 | 1.00 | 1.00 | 0.00 | 1.00 | 0.02 | 0.10 | C |
| SU90 | 0.99 | 1.00 | 0.03 | 0.05 | 0.00 | 0.04 | 0.98 | 1.00 | 1.00 | 0.98 | 1.00 | 1.00 | 0.00 | 0.03 | 1.00 | D |
| SU113 | 1.00 | 1.00 | 0.00 | 0.02 | 0.07 | 0.05 | 0.97 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.03 | 0.01 | 1.00 | D |
| SU76 | 0.96 | 1.00 | 0.00 | 0.00 | 0.01 | 0.05 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.05 | 0.98 | 0.97 | E |
| SU80 | 0.86 | 1.00 | 0.00 | 0.00 | 0.07 | 0.02 | 1.00 | 0.93 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | E |
| SU72 | 0.97 | 1.00 | 0.00 | 0.00 | 0.03 | 0.05 | 0.98 | 1.00 | 1.00 | 0.82 | 1.00 | 1.00 | 0.03 | 1.00 | 0.97 | E |
| SU73 | 0.96 | 1.00 | 0.01 | 0.00 | 0.01 | 0.05 | 1.00 | 1.00 | 1.00 | 0.96 | 1.00 | 1.00 | 0.01 | 0.01 | 0.00 | A |
| SU89 | 0.95 | 1.00 | 0.00 | 0.00 | 0.15 | 0.05 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.04 | 1.00 | 1.00 | E |
| SU70 | 0.91 | 1.00 | 0.00 | 0.01 | 0.02 | 0.03 | 0.87 | 1.00 | 1.00 | 0.97 | 1.00 | 0.98 | 0.21 | 0.99 | 0.98 | E |
| SU86 | 1.00 | 1.00 | 0.00 | 0.13 | 0.11 | 0.12 | 0.97 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.13 | 1.00 | 1.00 | E |
| SU63 | 0.79 | 1.00 | 0.01 | 0.04 | 0.01 | 0.04 | 0.95 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.13 | 1.00 | 1.00 | E |
| SU64 | 0.89 | 1.00 | 0.02 | 0.05 | 0.02 | 0.03 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.05 | 1.00 | 1.00 | E |
| SU65 | 0.20 | 0.85 | 0.02 | 0.06 | 0.00 | 0.01 | 0.98 | 0.85 | 0.73 | 1.00 | 1.00 | 0.88 | 0.03 | 0.77 | 0.96 | E |
| SU82 | 0.97 | 1.00 | 0.01 | 0.08 | 0.21 | 0.06 | 1.00 | 1.00 | 1.00 | 0.98 | 1.00 | 1.00 | 0.05 | 1.00 | 1.00 | E |
| SU83 | 0.98 | 1.00 | 0.01 | 0.03 | 0.15 | 0.06 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.05 | 1.00 | 0.24 | F |
| SU67 | 0.97 | 1.00 | 0.00 | 0.02 | 0.02 | 0.04 | 0.48 | 1.00 | 1.00 | 0.96 | 1.00 | 1.00 | 0.09 | 1.00 | 1.00 | E |
| SU103 | 0.94 | 1.00 | 0.00 | 0.00 | 0.09 | 0.04 | 0.95 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | E |
| SU40 | 0.92 | 1.00 | 0.00 | 0.02 | 0.01 | 0.03 | 0.95 | 1.00 | 0.97 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | E |
| SU62 | 0.92 | 1.00 | 0.01 | 0.05 | 0.01 | 0.06 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.03 | 1.00 | 1.00 | E |
| SU79 | 0.64 | 1.00 | 0.00 | 0.00 | 0.18 | 0.02 | 0.85 | 0.97 | 0.97 | 1.00 | 1.00 | 1.00 | 0.04 | 1.00 | 1.00 | E |
| SU99 | 0.95 | 0.99 | 0.00 | 0.00 | 0.18 | 0.07 | 0.99 | 0.94 | 0.98 | 1.00 | 1.00 | 1.00 | 0.05 | 1.00 | 1.00 | E |
| SU45 | 1.00 | 1.00 | 0.00 | 0.04 | 0.94 | 1.00 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.07 | 0.00 | G |
| SU101 | 0.88 | 1.00 | 0.00 | 0.02 | 0.04 | 0.04 | 0.95 | 1.00 | 1.00 | 0.99 | 1.00 | 1.00 | 0.07 | 1.00 | 1.00 | E |
| SU42 | 0.92 | 1.00 | 0.00 | 0.01 | 0.00 | 0.06 | 0.95 | 1.00 | 1.00 | 1.00 | 0.97 | 1.00 | 0.03 | 1.00 | 1.00 | E |
| SU43 | 0.98 | 1.00 | 0.01 | 0.00 | 0.01 | 0.07 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.01 | 1.00 | 1.00 | E |
| SU69 | 0.89 | 1.00 | 0.02 | 0.07 | 0.01 | 0.04 | 1.00 | 1.00 | 1.00 | 0.94 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | E |
| SU85 | 0.98 | 1.00 | 0.00 | 0.00 | 0.05 | 0.07 | 0.99 | 1.00 | 0.94 | 1.00 | 1.00 | 1.00 | 0.00 | 0.95 | 1.00 | E |
| SU49 | 0.94 | 1.00 | 0.00 | 0.00 | 0.02 | 0.03 | 0.94 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 0.76 | E |
| SU68 | 0.91 | 1.00 | 0.00 | 0.00 | 0.03 | 0.03 | 0.92 | 1.00 | 0.99 | 0.91 | 1.00 | 1.00 | 0.00 | 0.96 | 1.00 | E |
| SU87 | 0.96 | 1.00 | 0.00 | 0.00 | 0.13 | 0.04 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.05 | 1.00 | 1.00 | E |
| SU88 | 0.82 | 0.99 | 0.00 | 0.00 | 0.02 | 0.03 | 1.00 | 0.98 | 0.94 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | E |
| SU104 | 0.85 | 0.93 | 0.01 | 0.00 | 0.05 | 0.05 | 0.96 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.03 | 0.99 | 1.00 | E |
| SU60 | 0.78 | 0.99 | 0.00 | 0.00 | 0.03 | 0.02 | 1.00 | 0.99 | 0.97 | 1.00 | 1.00 | 1.00 | 0.03 | 0.97 | 0.78 | E |
| SU61 | 0.91 | 1.00 | 0.00 | 0.00 | 0.01 | 0.03 | 0.98 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 0.01 | 0.99 | 0.98 | E |
| SU84 | 1.00 | 1.00 | 0.05 | 0.02 | 0.11 | 0.07 | 0.98 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | E |
| SU98 | 0.92 | 1.00 | 0.00 | 0.02 | 0.09 | 0.03 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.92 | 1.00 | E |
*
Probability values higher than 0.5 (considered as positive results) are highlighted in bold.