Table 1.
Accuracy of medium-small size (less than fifteen strands) beta-barrel modeling from simulated density maps at 10 Å resolution.
| PDB IDa | #Det./#Obs. Strdb | 2-w Dist.c | #Det./#Obs. AAd |
|---|---|---|---|
| 1G7K_A13 | 11/11 | 1.80 | 85/124 |
| 1QD5_A17 | 12/12 | 1.93 | 99/140 |
| 1QJP_A | 8/8 | 1.78 | 70/107 |
| 1RRX_A12 | 12/11 | 1.81 | 86/118 |
| 1TX2_B | 8/8 | 0.92 | 31/34 |
| 1UYN_XA12 | 12/12 | 1.83 | 144/189 |
| 2ERV_A10 | 8/8 | 1.17 | 74/94 |
| 2K0L_A | 8/8 | 1.96 | 57/79 |
| 2LHF_A | 8/8 | 1.44 | 61/79 |
| 2QOM_C | 12/12 | 1.71 | 153/190 |
| 2VDF_AA28 | 10/10 | 1.61 | 144/172 |
| 2WJR_AA15 | 12/12 | 1.50 | 114/130 |
| 2X9K_AA15 | 14/14 | 1.63 | 151/188 |
| 3AEH_A15 | 12/12 | 1.85 | 141/194 |
| 3FID_A14 | 12/12 | 1.42 | 131/155 |
| 3GP6_A | 8/8 | 1.94 | 60/88 |
| 4E1S_A13 | 12/12 | 1.39 | 118/136 |
| 4FQE_A | 12/12 | 1.28 | 121/134 |
|
| |||
| Average | 1.61 | 1840/2351 = 78.26% | |
| Standard deviation | 0.29 | ||
aPDB_Sheet ID.
bThe number of β-traces in the best of the fifteen possible sets/the number of β-strands in the β-sheet of the PDB structure.
cThe 2-way distance (in Å) between observed β-traces and modeled β-traces for the best of the fifteen possible sets.
dThe number of detected/the total number of amino acids in the β-barrel.