Table 2.
Accuracy of large size beta-barrel (more than fifteen strands) modeling from simulated density maps at 10 Å resolution.
| PDB IDa | #Det./#Obs. Strdb | 2-w Dist.c | #Det./#Obs. AAd |
|---|---|---|---|
| 2GUF_D23 | 21/22 | 2.03 | 230/296 |
| 2HDI_D23 | 22/22 | 1.93 | 226/296 |
| 2J1N_AA18 | 16/16 | 1.77 | 146/181 |
| 2MPR_A19 | 19/19 | 2.49 | 134/224 |
| 2POR_S117 | 12/16 | 2.53 | 94/178 |
| 2QDZ_C17 | 16/16 | 1.32 | 177/198 |
| 2YNK_AC20 | 20/18 | 2.26 | 133/194 |
| 3CSL_C23 | 23/22 | 2.59 | 171/300 |
| 3EMN_A20 | 20/19 | 1.83 | 135/183 |
| 3PRN_A17 | 15/17 | 1.67 | 131/162 |
| 3SYB_A19 | 19/18 | 2.12 | 155/220 |
| 4C00_AE17 | 17/16 | 2.37 | 121/202 |
| 4GEY_A18 | 19/16 | 2.33 | 116/189 |
| 4K3C_C18 | 18/16 | 2.43 | 126/193 |
|
| |||
| Average | 2.12 | 2095/3016 = 69.46% | |
| Standard deviation | 0.38 | ||
aPDB_Sheet ID.
bThe number of β-traces in the best of the fifteen possible sets/the number of β-strands in the β-sheet of the PDB structure.
cThe 2-way distance (in Å) between the observed β-traces and the modeled β-traces for the best of the fifteen possible sets.
dThe number of detected/the total number of amino acids in the β-barrel.