Table 3.
Accuracy of beta-barrel modeling from cryo-EM experimental maps at medium resolutions.
| EMD_PDB IDa | Res.b | #Det./#Obs. Strdc | 2-w Dist.d | #Det./#Obs. AAe |
|---|---|---|---|---|
| 1657_4V5H_AH4 | 5.8 Å | 6/6 | 1.94 | 25/30 |
| 1780_4V7E_AH4 | 5.5 Å | 5/5 | 1.88 | 24/28 |
| 1829_4V5H_AH4 | 5.6 Å | 8/6 | 2.11 | 25/30 |
| 1849_4V6K_AE6 | 8.25 Å | 7/6 | 2.34 | 24/40 |
| 1849_4V6K_AC6 | 6/5 | 1.90 | 26/31 | |
| 1849_4V6K_AG2 | 6/6 | 2.74 | 31/52 | |
| 5030_4V68_AF8 | 6.4 Å | 4/5 | 1.72 | 24/32 |
| 5036_4V69_AD5 | 6.7 Å | 5/5 | 1.73 | 23/29 |
|
| ||||
| Average | 2.05 | 202/272 = 74.26% | ||
| Standard deviation | 0.35 | |||
aEMDB_PDB_Sheet ID.
bResolution of the cryo-EM density map.
cThe number of β-traces detected in the best of the fifteen possible sets/the number of β-strands in the β-sheet of the PDB structure.
dThe 2-way distance (in Å) between the observed β-traces and the modeled β-traces for the best of the fifteen possible sets.
eThe number of detected/the total number of amino acids in the β-barrel.