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. 2017 Jan 24;8:19. doi: 10.3389/fpls.2017.00019

Table 3.

Various average energy parameters of each system after Molecular Dynamics (MD) simulation analysis.

Various energies and structural validation statistics Maize Wheat T. urartu Ae. tauschii Brachypodium Rice Barley Sorghum Arabidopsis Chickpea Potato
Total energy in Kcal/mol −339,510 −345,632 −320019.9 −345768.8 −338027.48 −375,651 −373,275 −337,195 −344537.89 −353074.87 −342,517
Potential energy in Kcal/mol −430,721 −437,789 −404186.1 −438186.7 −426788.93 −475,387 −472,755 −427257.56 −437024.80 −447208.06 −433,711
Volume (Å3) 1,547,957 1,558,700 1450820.1 1,561,993 1531665.44 1,439,503 1,429,764 1531994.11 1568638.944 1598327.28 1,556,526
Atoms in each orthorhombic box 182078 183,110 169,772 183,562 178,846 145,566 144,623 179,298 184,546 188,194 182,880
Added Na+ ions 29 44 42 43 45 50 46 45 22 32 20
dFire energy −2647.3 −2461.2 −2253.5 −2659.85 −2511.89 −266.53 −2651.3 −2636.77 −2634.55 −2651.31 −2657.8
QMEAN6 0.698 0.691 0.66 0.68 0.681 0.704 0.692 0.695 0.69 0.692 0.701
Core region 84.2 83.6 82.8 83 82.6 83.3 84 84 82.9 82.7 83.9
Allowed region 14.7 14.9 15.7 15.4 16 15.5 14.8 14.3 16 15.2 14.9
Generously allowed region 0.9 1.3 1 1.1 1.1 0.9 0.9 1.2 0.5 1.6 0.8
Disallowed region 0.3 0.3 0.5 0.5 0.3 0.3 0.3 0.5 0.6 0.5 0.4
G factor −0.97 −0.98 −0.99 −0.99 −1.01 −0.93 −0.94 −1 −0.97 −1.01 −0.97