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. 2017 Jan 24;7:41191. doi: 10.1038/srep41191

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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(a) Contour plots of ln (rowCV) versus ln (rowMean) scatter plots and the regression fitting analysis with PLGEM model. Black circles indicate the modeling points used to fit a PLGEM model. (b) Quantile-quantile (Q-Q) plot. (c) Correlation of signal-to-noise ratios (STN) and protein abundance fold changes. (d) A volcano plot showing the relationship between the PLGEM-STN and the p-value calculated by PLGEM. The DEPs are shown in red (P < 0.01). (e) DEP fold change correlation of SWATH-MS and super-SILAC MS analyses. (f) Cluster analysis using DEPs. C represents subjects with NPC, and N stands for normal subjects.