Table 1. Differentially expressed proteins of SWATH-MS referenced by super-SILAC MS.
| Swiss-Prot ID | Protein name | NPC/normal ratio in super-SILAC | NPC/normal average ratio in SWATH | SWATH P-value | HGNC Gene name |
|---|---|---|---|---|---|
| P16157 | Ankyrin-1 | 4.32 | 8.48 | 8.64 × 10−3 | ANK1 |
| P04004 | Vitronectin | 3.51 | 8.56 | 9.53 × 10−4 | VTN |
| Q04695 | Keratin, type I cytoskeletal 17 | 3.09 | 7.21 | 1.10 × 10−4 | KRT17 |
| P00918 | Carbonic anhydrase 2 | 2.67 | 5.71 | 7.05 × 10−3 | CA2 |
| P50454 | Serpin H1 | 2.64 | 4.77 | 8.84 × 10−3 | SERPINH1 |
| P09914 | Interferon-induced protein with tetratricopeptide repeats 1 | 2.24 | 6.88 | 5.39 × 10−3 | IFIT1 |
| P14174 | Macrophage migration inhibitory factor | 1.61 | 7.88 | 3.24 × 10−3 | MIF |
| Q8WU39 | Marginal zone B- and B1-cell-specific protein | 1.37 | 3.44 | 6.74 × 10−3 | MZB1 |
| P30511 | HLA class I histocompatibility antigen, alpha chain F | 1.3 | 11.4 | 7.40 × 10−3 | HLA-F |
| P48444 | Coatomer subunit delta | 1.27 | 11.61 | 4.53 × 10−3 | ARCN1 |
| P82650 | 28 S ribosomal protein S22, mitochondrial | 1.23 | 7.4 | 6.93 × 10−3 | MRPS22 |
| P62136 | Serine/threonine-protein phosphatase PP1-alpha catalytic subunit | 1.19 | 22.04 | 1.61 × 10−3 | PPP1CA |
| P62857 | 40 S ribosomal protein S28 | 1.13 | 4.29 | 9.40 × 10−3 | RPS28 |