Table 4. Gene-based association analysis using Vegas2 for p-values < = 1 × 10−3.
| Gene | Number of SNPs | P-value | Top SNP | Top SNP p-value |
|---|---|---|---|---|
| C4B_2_1 | 14 | 1.65 × 10−4 | rs389512 | 3.20 × 10−6 |
| C4B_1 | 14 | 1.67 × 10−4 | rs389512 | 3.20 × 10−6 |
| C4A_1 | 14 | 1.76 × 10−4 | rs389512 | 3.20 × 10−6 |
| LOC102060414 | 15 | 1.83 × 10−4 | rs389512 | 3.20 × 10−6 |
| MIR1236 | 15 | 1.85 × 10−4 | rs389512 | 3.20 × 10−6 |
| SKIV2L | 15 | 1.88 × 10−4 | rs389512 | 3.20 × 10−6 |
| STK19_1 | 15 | 1.88 × 10−4 | rs389512 | 3.20 × 10−6 |
| NELFE | 15 | 1.91 × 10−4 | rs389512 | 3.20 × 10−6 |
| CFB | 15 | 1.92 × 10−4 | rs389512 | 3.20 × 10−6 |
| DXO | 15 | 2.17 × 10−4 | rs389512 | 3.20 × 10−6 |
| CYP21A1P | 5 | 8.96 × 10−4 | rs389512 | 3.20 × 10−6 |
| CYP21A2_1 | 5 | 8.73 × 10−4 | rs389512 | 3.20 × 10−6 |
Top SNP rs389512 appears for all the top gene list due to very high LD.