Table 2. Suggestive PD risk non-synonymous (p-value < 0.05) within genes harbored in PD GWA intervals.

SNV	Chromosome	Position	Gene	AA	Damaging prediction	Allele	MAF (Cases)	MAF (Controls)	Odds Ratio	Pval
rs2228396	6	32797809	TAP2	A/T	PolyPhen = benign(0.06); SIFT = tolerated(0.3); GMAF = T: 0.0983	T/C	0.061	0.097	0.61	0.008
rs61736778	12	40837165	MUC19	T/I	PolyPhen = possibly_damaging(0.74); SIFT = tolerated(0.34); GMAF = T: 0.0115	T/C	0.022	0.011	1.96	0.048
rs2114566	12	40814107	MUC19	I/V	PolyPhen = benign(0); SIFT = tolerated(0.33); GMAF = G: 0.0445	G/A	0.029	0.018	1.64	0.01
rs10506156	12	40823474	MUC19	V/I	PolyPhen = benign(0); SIFT = tolerated(0.7); GMAF = A: 0.0450	A/G	0.029	0.018	1.64	0.016
rs17467164	12	40814197	MUC19	V/I	PolyPhen = benign(0.002); SIFT = tolerated(0.96); GMAF = A: 0.0445	A/G	0.029	0.018	1.64	0.01
rs3742569	14	55818706	FBXO34	L/P	PolyPhen = benign(0.001); SIFT = tolerated(0.12); GMAF = C: 0.3926	C/T	0.379	0.441	0.77	0.008
rs1045002	14	55818517	FBXO34	I/N	PolyPhen = benign(0); SIFT = tolerated(0.51); GMAF = A: 0.3434	A/T	0.379	0.44	0.78	0.009
rs6669481	1	2.06E + 08	SLC26A9	R/G	PolyPhen = benign(0.001); GMAF = C: 0.1497	C/T	0.108	0.072	1.55	0.012
rs3742884	14	68251934	ZFYVE26	A/V	PolyPhen = benign(0.011); SIFT = tolerated(1); GMAF = A: 0.0473	A/G	0.024	0.012	2.06	0.019
rs3742883	14	68234539	ZFYVE26	N/S	PolyPhen = benign(0.002); SIFT = tolerated(0.81); GMAF = T: 0.0826	T/C	0.024	0.012	2.06	0.02
rs34094401	14	68352648	RAD51B	L/W	PolyPhen = probably_damaging(0.912); SIFT = deleterious(0.02); GMAF = G: 0.0188	G/T	0.02	0.006	3.54	0.008
rs1442138	4	90816294	MMRN1	T/A	PolyPhen = benign(0.005); SIFT = tolerated(0.98); GMAF = G: 0.0684	G/A	0.092	0.054	1.79	0.004
rs12647859	4	91230579	FAM190A	G/S	PolyPhen = benign(0.172); SIFT = tolerated(0.21); GMAF = A: 0.1754	A/G	0.138	0.101	1.43	0.035
rs3886999	20	3577062	ATRN	R/K	PolyPhen = benign(0.002); SIFT = tolerated(1); GMAF = A: 0.0225	A/G	0.026	0.045	0.57	0.047
rs41309351	20	2776527	CPXM1	R/W	PolyPhen = benign(0.011); SIFT = tolerated(0.09); GMAF = A: 0.0051	A/G	0.018	0.003	5.24	0.003
rs17782078	20	3541382	ATRN	I/T	PolyPhen = benign(0.072); SIFT = tolerated(0.28); GMAF = C: 0.0225	C/T	0.026	0.045	0.58	0.046
rs34753687	19	2833943	ZNF554	G/E	PolyPhen = probably_damaging(0.938); SIFT = tolerated(1); GMAF = A: 0.0106	A/G	0.035	0.014	2.64	0.006
rs45562539	19	1918134	SCAMP4	A/T	PolyPhen = benign(0.01); SIFT = tolerated(0.22); GMAF = A: 0.0051	A/G	0.007	0.021	0.31	0.043
rs13243961	7	23240263	NUPL2	D/N	PolyPhen = possibly_damaging(0.457); SIFT = tolerated(0.92); GMAF = A: 0.0560	A/G	0.145	0.083	1.87	0
rs1547742	1	2.33E + 08	SIPA1L2	S/L	PolyPhen = benign(0.109); SIFT = tolerated(0.05); GMAF = A: 0.0680	A/G	0.055	0.1	0.52	0.001