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. 2016 Dec 23;17(Suppl 17):477. doi: 10.1186/s12859-016-1335-8

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© The Author(s) 2016

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — The F₁ score of five pathway analysis methods for each dataset. a is the result of H5N1 and b is the result of Th17. Fisher’s exact test, GSEA and CliPPER from graphite web were compared with ContextTRAP and also original TRAP was included in the comparison. ContextTRAP shows higher F₁ score than other three methods and even than original TRAP