Table 1.
Draft chromosomes used in the testing dataset
| Organism | Accession No. | Size (bp) | #CON | COV (%) |
|---|---|---|---|---|
| Aciduliprofundum boonei T469 | NC_013926 | 1,486,778 | 35 | 98.63 |
| Bacillus subtilis 168 | NC_000964 | 4,215,606 | 5 | 99.97 |
| Bifidobacterium longum DJO10A | NC_010816 | 2,375,792 | 58 | 85.47 |
| Brucella melitensis bv 1 16M (I) | NC_003317 | 2,117,144 | 41 | 90.83 |
| Brucella melitensis bv 1 16M (II) | NC_003318 | 1,177,787 | 12 | 99.77 |
| Brucella pinnipedialis B2 94 (I) | NC_015857 | 2,138,342 | 55 | 87.47 |
| Brucella pinnipedialis B2 94 (II) | NC_015858 | 1,260,926 | 34 | 84.38 |
| Burkholderia thailandensis E264 (II) | NC_007650 | 2,914,771 | 15 | 70.34 |
| Burkholderia thailandensis E264 (I) | NC_007651 | 3,809,201 | 28 | 89.90 |
| Chlamydia muridarum Nigg | NC_002620 | 1,072,950 | 4 | 99.09 |
| Clostridium cellulovorans 743B | NC_014393 | 5,262,222 | 297 | 96.54 |
| Corynebacterium aurimucosum ATCC 700975 | NC_012590 | 2,790,189 | 90 | 92.94 |
| Corynebacterium efficiens YS 314 | NC_004369 | 3,147,090 | 118 | 95.09 |
| Micrococcus luteus NCTC 2665 | NC_012803 | 2,501,097 | 126 | 86.25 |
| Mycobacterium tuberculosis H37Ra | NC_009525 | 4,419,977 | 220 | 76.84 |
| Mycoplasma genitalium G37 | NC_000908 | 580,076 | 24 | 78.54 |
| Saccharopolyspora erythraea NRRL 2338 | NC_009142 | 8,212,805 | 238 | 97.10 |
| Selenomonas sputigena ATCC 35185 | NC_015437 | 2,568,361 | 53 | 94.01 |
| Stigmatella aurantiaca DW4 3 1 | NC_014623 | 10,260,756 | 470 | 99.05 |
| Streptococcus pneumoniae TIGR4 | NC_003028 | 2,160,842 | 209 | 90.31 |
| Vibrio Ex25 (I) | NC_013456 | 3,259,580 | 176 | 91.43 |
| Vibrio Ex25 (II) | NC_013457 | 1,829,445 | 33 | 95.31 |
| Yersinia pestis Nepal516 | NC_008149 | 4,534,590 | 17 | 83.86 |
Column “#CON” contains the number of contigs selected for contig scaffolding experiments by excluding, for example, those contigs not mapped to reference chromosome. Column “COV” gives the fraction of each chromosome covered by selected contigs