Table 1.
Clone | Length | Transversions | Transitions | Total number of base substitutions | |
---|---|---|---|---|---|
C → T, G → A | T → C, A → G | ||||
Group I: long repeats | |||||
Ab-5S-05 | 199 | 0 | 1 | 0 | 1 |
Ab-5S-09 | 199 | 1 | 1 | 1 | 3 |
Ab-5S-14 | 199 | 2 | 2 | 0 | 4 |
Ab-5S-15 | 199 | 0 | 0 | 0 | 0 |
Ab-5S-16 | 199 | 2 | 2 | 0 | 4 |
Ab-5S-24 | 200 | 5 | 3 | 0 | 8 |
Ab-5S-93 | 198 | 0 | 0 | 0 | 0 |
Total for group I | 1393 | 10 (50.0%) | 9 (45.0%) | 1 (5.0%) | 20 (100%) |
Group II: intermediate repeats | |||||
Ab-5S-03 | 112 | 0 | 0 | 0 | 0 |
Ab-5S-36 | 144 | 6 | 9 | 1 | 16 |
Ab-5S-37 | 112 | 0 | 1 | 0 | 1 |
Ab-5S-43 | 112 | 0 | 0 | 0 | 0 |
Ab-5S-53 | 112 | 0 | 0 | 0 | 0 |
Ab-5S-52 | 112 | 1 | 2 | 0 | 3 |
Ab-5S-54 | 112 | 0 | 0 | 0 | 0 |
Ab-5S-61 | 112 | 0 | 1 | 0 | 1 |
Total for group II | 928 | 7 (33.3%) | 13 (61.9%) | 1 (4.8%) | 21 (100%) |
Group III: short repeats | |||||
Ab-5S-02 | 54 | 1 | 5 | 0 | 6 |
Ab-5S-32 | 53 | 1 | 5 | 0 | 6 |
Ab-5S-33 | 54 | 1 | 4 | 0 | 5 |
Ab-5S-39 | 62 | 3 | 4 | 0 | 7 |
Ab-5S-42 | 54 | 1 | 2 | 0 | 3 |
Total for group III | 277 | 7 (25.9%) | 20 (74.1%) | 0 | 27 (100%) |
Note: The number of base substitutions was calculated comparing sequences of individual clones and the consensus sequence. Lengths of clones are presented without primers used for PCR