Table 5.
A selection of genes that are differentially expressed in leaves or in roots
| Clone Identification | GenBank accession no. | Average Ratio1 | Function2 | Annotation (BLAST hit and organism) |
| Leaves up-regulated | ||||
| Gm-b10BB-41 | AI495218 | 0.103 | en | Rubisco (Glycine max) |
| Gm-r1088-7900 | BU550654 | 0.294 | en | Light harvesting chlorophyll a/b binding protein (Arabidopsis thaliana) |
| Gm-r1088-8981 | BU549821 | 0.261 | en | Photosystem I subunit (Oryza sativa) |
| Gm-r1088-3538 | BU546899 | 0.365 | en | Thylakoid lumen protein (Arabidopsis thaliana) |
| Gm-b10BB-47 | AW185639 | 0.171 | en | Plastocyanin precursor (Glycine max) |
| Gm-r1088-2905 | BU546179 | 0.258 | en | Trehalose-6-phosphate phosphatase (Arabidopsis thaliana) |
| Gm-r1088-7106 | BU548940 | 0.150 | st | Vegetative Storage Protein (Glycine max) |
| Gm-r1088-5827 | BU548964 | 0.465 | df | Acidic chitinase (Glycine max) |
| Gm-r1088-6724 | BU549206 | 0.217 | cmg | Putative calreticulin (Oryza sativa) |
| Gm-r1088-3756 | BU546067 | 0.415 | cmg | Cytochrome P450 (Pyrus communis) |
| Gm-r1088-8229 | BU550097 | 0.454 | cmg | Catalase (Glycine max) |
| Gm-r1088-5243 | BU547961 | 0.143 | cmg | Putative serine carboxypeptidase II-3 precursor (Oryza sativa) |
| Gm-r1088-1433 | BU545435 | 0.200 | cmg | H protein (Flaveria anomala) |
| Gm-b10BB-12 | AI900038 | 0.211 | cmg | F3H (Flavanone-3-Hydroxylase) (Glycine max) |
| Gm-r1088-4994 | BU547986 | 0.205 | cmg | Matrix metalloproteinase MMP2 (Glycine max) |
| Gm-r1088-2794 | BU547254 | 0.138 | cmg | Putative lipoic acid synthase (LIP1) (Arabidopsis thaliana) |
| Gm-r1088-4578 | BU547484 | 0.165 | cmg | Lipid transfer protein-like protein (Retama raetam) |
| Roots up-regulated | ||||
| Gm-r1088-5321 | BU547784 | 3.806 | no | Nodulin-26 (Glycine max) |
| Gm-r1088-7410 | BU550525 | 2.304 | no | MtN19 homolog (Medicago truncatula) |
| Gm-r1088-6955 | BU551008 | 4.630 | no | Similar to nodulins and lipase homolog (Arabidopsis thaliana) |
| Gm-r1088-6384 | BU550458 | 4.431 | to | bZIP transcription factor (Arabidopsis thaliana) |
| Gm-b10BB-11 | AI930858 | 3.008 | df | Chalcone isomerase (Glycine max) |
| Gm-r1088-6204 | BU547671 | 2.541 | cmg | Putative aquaporin (tonoplast intrinsic protein) (Arabidopsis thaliana) |
| Gm-r1088-2818 | BU546503 | 2.848 | cmg | Phosphoenolpyruvate carboxkinase (Flaveria trinervia) |
| Gm-r1088-1741 | BU544616 | 2.724 | cmg | Similar to sucrose synthase (Pisum sativum) |
| Gm-b10BB-37 | AW309104 | 6.228 | cmg | Proline-rich protein (Glycine max) |
| Gm-b10BB-38 | AI442449 | 2.233 | cmg | DAD-1 (Defender Against apoptopic cell Death) (Glycine max) |
| Gm-r1088-5369 | BU547794 | 8.372 | cmg | Ripening related protein (Glycine max) |
| Gm-r1088-7112 | BU548943 | 6.661 | cmg | Germin-like protein (Phaseolus vulgaris) |
| Gm-r1088-5330 | BU547868 | 4.974 | cmg | Pectinesterase (EC 3.1.1.11) precursor (Vigna radiata) |
| Gm-r1088-6104 | BU549267 | 4.554 | cmg | Asparagine synthase (glutamine-hydrolyzing) (Glycine max) |
| Gm-r1088-741 | BU544257 | 2.455 | cmg | Cationic peroxidase (Glycine max) |
| Gm-b10BB-45 | AW318233 | 2.135 | cmg | Tubulin (b chain) (Glycine max) |
| Gm-r1088-5315 | BU547781 | 4.334 | u | Specific tissue protein 1 (Cicer arietinum) |
| Gm-r1088-5332 | BU547869 | 4.267 | oth | Auxin-repressed protein (Robinia pseudoacacia) |
1 The average ratios of individual values from two slides after normalization and using a dye swap procedure.
2 en – energy; st – storage; to – transcription; cmg – cell growth and maintenance; u – unknown; oth – other; df – defense; no – nodulation related