(
A) Schematic representation of the strategy for gene deletion and marker recycling via negative selection. Two different
trp1(-) lines were generated by independent transfection of two different constructs into wild-type (
wt) P. berghei strain ANKA parasites. The vector contained the positive-negative selection marker
hdhfr-yfcu. The marker gene was flanked by ~1 kb sequences upstream and downstream of the open reading frame of
trp1 to generate a knockout line by double crossover homologous recombination (
trp1(-)). In addition, a second vector was generated to visualize
trp1 promoter activity in vivo via expression of mCherry (
trp1(-)mCh). Location of primers and the approximate length of the PCR fragments used for genotyping are indicated by arrows and lines below the scheme. (
B) PCR analysis of clonal
trp1(-) and
trp1(-)mCh parasites. Note the shift in size of the complete locus (full) between
trp1(-)mCh and
wt. The expected sizes of the PCR products are indicated below. PCR analysis of negatively selected knockout parasites
trp1(-)rec revealed loss of the selection cassette. Note the shift in size of the PCR product for the selection marker (SM) before and after negative selection. (
C) RT-PCR with cDNA generated from
trp1(-) and
trp1(-)mCh midgut sporozoites. The PCR with the primers P1411/P1444 shows the presence of cDNA indicated by the loss of an intron and the shift in size of α-tubulin I. The PCR with the primers P697/P1410 is specific for
trp1. An internal control with gDNA from the
P. berghei ANKA strain is also shown to verify that the PCR worked. See also
Figure 5.