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. 2016 Dec 5;130(2):433–444. doi: 10.1007/s00122-016-2824-x

Table 3.

The observed pairwise recombination frequencies for ordered triplet of markers M 1M 2M 3

ρ12 ρ23 ρ13
εM1=0,εM2=0,εM3=0 θ 12 θ 23 θ 12 + θ 23 − 2θ 12 θ 23
εM1=ε,εM2=0,εM3=0 θ 12 + ε(1 − 2θ 12) θ 23 θ 12 + θ 23 − 2θ 12 θ 23 + ε(1 − 2θ 12)(1 − 2θ 23)
εM1=0,εM2=0,εM3=ε θ 12 θ 23 + ε(1 − 2θ 23) θ 12 + θ 23 − 2θ 12 θ 23 + ε(1 − 2θ 12)(1 − 2θ 23)
εM1=ε,εM2=0,εM3=ε θ 12 + ε(1 − 2θ 12) θ 23 + ε(1 − 2θ 23) θ 12θ 23 − 2θ 12 θ 23 + 2ε(1 − ε)(1 − 2θ 12)(1 − 2θ 23)
εM1=0,εM2=ε,εM3=0 θ 12 + ε(1 − 2θ 12) θ 23 + ε(1 − 2θ 23) θ 12 + θ 23 − 2θ 12 θ 23
εM1=ε,εM2=ε,εM3=0 θ 12 + 2ε(1 − ε)(1 − 2θ 12) θ 23 + ε(1 − 2θ 23) θ 12 + θ 23 − 2θ 12 θ 23 + ε(1 − 2θ 12)(1 − 2θ 23)
εM1=0,εM2=ε,εM3=ε θ 12 + ε(1 − 2θ 12) θ 23 + 2ε(1 − ε)(1 − 2θ 23) θ 12 + θ 23 − 2θ 12 θ 23 + ε(1 − 2θ 12)(1 − 2θ 23)
εM1=ε,εM2=ε,εM3=ε θ 12 + 2ε(1 − ε)(1 − 2θ 12) θ 23 + 2ε(1 − ε)(1 − 2θ 23) θ 12 + θ 23 − 2θ 12 θ 23 + 2ε(1 − ε)(1 − 2θ 12)(1 − 2θ 23)

Denotations of θ 12, θ 23, εM1, εM2, εM3 and ε are identical to those in Table 1