Table 1. Sequence characteristics of the applied data matrices.
| Datasets | No. of sites (bp) | No. of variable sites (bp) | No. of parsimonious-informative sites (bp) |
|---|---|---|---|
| PCG | 81,423 | 17,882 | 11,394 |
| PCG12 | 54,282 | 9,596 | 6,055 |
| AA | 27,141 | 7,613 | 5,117 |
| PCG-GB-relaxed | 74,528 | 16,278 | 10,765 |
| PCG-GB-default | 68,588 | 12,797 | 8,345 |
| PCG-GB-strict | 63,299 | 9,900 | 6,227 |
| PCG-Iss-9 | 28,494 | 10,867 | 7,160 |
| PCG-Iss-73 | 52,929 | 7,015 | 4,234 |
| PCG-slope-12 | 28,995 | 11,045 | 7,290 |
| PCG-slope-70 | 52,428 | 6,837 | 4,104 |
| PCG-R2-11 | 19,362 | 7,801 | 5,215 |
| PCG-R2-71 | 62,061 | 10,081 | 6,179 |
| PCG-OV-slow-partition | 10,286 | 10,286 | 3,798 |
| PCG-OV-medium-partition | 10,286 | 10,286 | 3,798 |
| PCG-OV-fast-partition | 10,286 | 10,286 | 3,798 |
| PCG-TIGER-slow-partition | 10,286 | 10,286 | 3,798 |
| PCG-TIGER-medium-partition | 10,286 | 10,286 | 3,798 |
| PCG-TIGER-fast-partition | 10,286 | 10,286 | 3,798 |
| PCG-OV-sorted | 77,173 | 13,632 | 7,810 |
PCG, PCG12, AA, PCG-GB-relaxed, PCG-GB-default, PCG-GB-strict, PCG-Iss-9, PCG-Iss-73, PCG-slope-12, PCG-slope-70, PCG-R2-11, PCG-R2-71, PCG-OV-slow-partition, PCG-OV-medium-partition, PCG-OV-fast-partition, PCG-TIGER-slow-partition, PCG-TIGER-medium-partition, PCG-TIGER-fast-partition and PCG-OV-sorted are explained in Materials and Methods.